BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0037.p
         (270 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311963|ref|YP_003776055.1| precorrin-4 C11-methyltransfera...   442   e-125
gi|300312404|ref|YP_003776496.1| uroporphyrinogen-III C-methyltr...    88   7e-19

>gi|300311963|ref|YP_003776055.1| precorrin-4 C11-methyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 258

 Score =  442 bits (1137), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 219/258 (84%), Positives = 234/258 (90%)

Query: 1   MKVYFVGAGPGAPDLITLRGAKLLGSVQMVLYAGSLVPTEMLQHCRPDAELIDTAQLDLE 60
           MKVYFVGAGPGA DLITLRGA+LLG V+MVLYAGSLVPT +L+HC P AE+IDTA LDLE
Sbjct: 1   MKVYFVGAGPGAADLITLRGARLLGQVRMVLYAGSLVPTALLEHCHPAAEIIDTAALDLE 60

Query: 61  QQQACYERAKAQDLDVVRLHSGDPAIYGATAEQMRRLEALDIAYEVVPGVSSFTAAASAV 120
           QQQACY RA+ Q +DVVRLHSGDPAIYGATAEQMRRL+AL IAYEVVPGVSSFTAAA+AV
Sbjct: 61  QQQACYVRAQEQGIDVVRLHSGDPAIYGATAEQMRRLDALGIAYEVVPGVSSFTAAAAAV 120

Query: 121 TAELTKPEVSQTVILTRVSGRASAVPELESIARLAEHRATMCIFLSGPHLKKIVTDLRLH 180
           +AELTKPEVSQ+VILTRVSGRASAVPE ESIA LA HRATMCIFLSGPHLKKIVTDL LH
Sbjct: 121 SAELTKPEVSQSVILTRVSGRASAVPESESIASLAAHRATMCIFLSGPHLKKIVTDLLLH 180

Query: 181 YPDTTPVTLVYRATWPDQRVYQGTLATVLEETKRGAWNLTTMMLVGAALDKGRQVESSLY 240
           YP  TPVTLVYRATWP+QR+YQG L  VLEE KRG WNLTTMMLVGAAL+K +  ESSLY
Sbjct: 181 YPPATPVTLVYRATWPEQRIYQGQLDKVLEENKRGEWNLTTMMLVGAALNKEQVAESSLY 240

Query: 241 SKDFTHLFRVVKKNKDAA 258
           SKDFTHLFRVVKKNKDAA
Sbjct: 241 SKDFTHLFRVVKKNKDAA 258


>gi|300312404|ref|YP_003776496.1| uroporphyrinogen-III
           C-methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 253

 Score = 88.2 bits (217), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 84/240 (35%), Positives = 128/240 (53%), Gaps = 28/240 (11%)

Query: 3   VYFVGAGPGAPDLITLRGAKLLGSVQMVLYAGSLVPTEMLQHCRPDAELID--------- 53
           V+ VG+GPGA DL+T+R A+LL   ++VL+  +LV  ++L  C P A L+          
Sbjct: 25  VWLVGSGPGAADLLTVRAARLLAQAEIVLH-DALVTPDILALC-PQAVLVSVGKRSGQRS 82

Query: 54  TAQLDLEQQQACYERAKAQDLDVVRLHSGDPAIYGATAEQMRRLEALDIAYEVVPGVSSF 113
           TAQ  + Q+      A  Q   VVRL  GDP ++G   E+MR LE   I YE+VPG+++ 
Sbjct: 83  TAQPVINQK---LVEAAQQYRRVVRLKGGDPMLFGRADEEMRALEEHHIPYEIVPGITAA 139

Query: 114 TAAASAVTAELTKPEVSQTVILTRVSGRASAVPELESIARLAEHRATMCIFLSGPHLKKI 173
            AAASA    LT+  ++++V L   S   + V E + + R+  +  T+  ++ G   +  
Sbjct: 140 LAAASAAKRPLTRRGIARSVSLFTSS---TGVDEPDEV-RM-PNGDTLVQYMGG--REAT 192

Query: 174 VTDLRL----HYPDTTPVTLVYRATWPDQRVYQGTLATVLEETKRGAWNLTTMMLVGAAL 229
            T  RL    H PD TPV +V   + PDQ +Y   LA +  E    A +   ++++G AL
Sbjct: 193 ATAQRLLALGHAPD-TPVVVVENCSRPDQHIYHLQLAGL--EAGLQACSGPVLVMIGPAL 249


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.132    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 781,815
Number of extensions: 29251
Number of successful extensions: 109
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 2
Length of query: 270
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 186
Effective length of database: 1,222,130
Effective search space: 227316180
Effective search space used: 227316180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)