BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0036.p
         (244 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311964|ref|YP_003776056.1| precorrin-2 C20-methyltransfera...   345   3e-96

>gi|300311964|ref|YP_003776056.1| precorrin-2 C20-methyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 256

 Score =  345 bits (884), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 176/240 (73%), Positives = 201/240 (83%), Gaps = 4/240 (1%)

Query: 4   GIGVGPGPAGYLPLAAMQALQQADLIYVPRAKSADTSVALQCLEGVAVAPERLREVEFNM 63
           GIGVGPGPAGYLPLAA+ AL+ ADLIY+PRA+ AD SVALQCL+GV     RL E+EFNM
Sbjct: 11  GIGVGPGPAGYLPLAAIAALRSADLIYIPRARGADLSVALQCLDGVEFDRSRLCEIEFNM 70

Query: 64  DPDRNVLREHYAQLAQDIAAELQAGRSVAYLTIGDTLTYSTYGYILAALKDLLPAFPHRT 123
           DPDR VL+EHYAQL Q +AA+L+ G  V YLTIGD LTYSTYGY+LAA++DL P     T
Sbjct: 71  DPDRQVLQEHYAQLGQQLAAQLRQGLQVVYLTIGDALTYSTYGYVLAAVRDLYPGCDCVT 130

Query: 124 FPGITSYASAAAALDWPLGVGKERTLILPCPDDPATLQHEIETHDIVVLMKVGARLPWVL 183
           FPGITSYA+AAAAL+WPLGVGKERTLILPCPDD A+L+ EIE+HDIVVLMKVGARLPWVL
Sbjct: 131 FPGITSYAAAAAALEWPLGVGKERTLILPCPDDAASLRAEIESHDIVVLMKVGARLPWVL 190

Query: 184 ALLKEMGIAGHCAFARRIGLDGEVLANDLRELEAGDRDHAVSGYLATMLIRKTALEKRHQ 243
           ALL+EMGIA HC FARRIGL+GEVLA+DL  L+A D     SGYLA +LIRKTA  +RH+
Sbjct: 191 ALLREMGIAQHCGFARRIGLEGEVLASDLTALDAAD----ASGYLAVLLIRKTAQAQRHR 246


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 793,297
Number of extensions: 33255
Number of successful extensions: 124
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 161
Effective length of database: 1,226,865
Effective search space: 197525265
Effective search space used: 197525265
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)