BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0033.p
         (383 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311966|ref|YP_003776058.1| precorrin-8X methylmutase [Herb...   456   e-129

>gi|300311966|ref|YP_003776058.1| precorrin-8X methylmutase
           [Herbaspirillum seropedicae SmR1]
          Length = 525

 Score =  456 bits (1174), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 245/337 (72%), Positives = 281/337 (83%), Gaps = 1/337 (0%)

Query: 22  IVIAGHGSRDADAVREFEALVEIVRARAPGRIVTHGYLEFSSPTISEAVDANLAAGSKQV 81
           +VIAGHGSRD D++REFEALV++VR RA GRIV HGYLEF++PTI+EA  A +A G+ +V
Sbjct: 9   VVIAGHGSRDPDSLREFEALVDLVRERAAGRIVRHGYLEFAAPTIAEAAAACVADGATEV 68

Query: 82  AVVPGVLLAARHAKNDMPAEVLELARRHPEVDFHFGAALNLHPQLLQLAQERILAAEAQS 141
           AVVPGVLL ARHAKNDMPAE+L LAR +P+VDFHFGA ++LHP LLQL Q+R++ AEAQS
Sbjct: 69  AVVPGVLLGARHAKNDMPAELLALARDYPQVDFHFGAPMDLHPLLLQLVQQRVVEAEAQS 128

Query: 142 SQTIRRDDTCLVLVGRGTTDPDANGEVSKLARMLEEGMGFGGVYVCYSGTAKPLVADGLR 201
              I R D+CLVLVGRGTTDPDANGE++KLARM++EGMGFGG+ VC+SGTA PLV DGL 
Sbjct: 129 QDLIARRDSCLVLVGRGTTDPDANGEIAKLARMVQEGMGFGGIKVCFSGTATPLVRDGLA 188

Query: 202 AAALLGFARIIVLPFFLFDGVLVKRIYAAADDLQQREPGLEVLKAGYLGVHQHVADVLLE 261
            AA  G+ R++VLPFFLFDGVLVKRIYAAAD+L QREPG+EVLKA YLGVH HVADV+LE
Sbjct: 189 QAAPEGWQRLVVLPFFLFDGVLVKRIYAAADELAQREPGVEVLKAAYLGVHAHVADVMLE 248

Query: 262 RAREAVEGRAAMNCSLCKYRVQIVGFEEQIGEPQRAHHLQVRGLLSRETLVAEPQAEFPP 321
           RAREA EGRAAMNC+LCKYRVQIVGFE+Q+GEPQRAHHLQVR L +RE   A       P
Sbjct: 249 RAREAAEGRAAMNCTLCKYRVQIVGFEQQVGEPQRAHHLQVRDLAAREQ-SAPAILGTAP 307

Query: 322 YVPHPIEKESFEIIAAGRDWSMFPPAHLTALXAATST 358
           YVPHPIE ES EII AGRDWS FPP HLT L     T
Sbjct: 308 YVPHPIEAESMEIIQAGRDWSGFPPEHLTVLQRLVHT 344


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,113,276
Number of extensions: 42628
Number of successful extensions: 184
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 2
Length of query: 383
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 296
Effective length of database: 1,207,925
Effective search space: 357545800
Effective search space used: 357545800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)