BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0032.p
         (242 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311967|ref|YP_003776059.1| precorrin-6y methylase methyltr...   424   e-120

>gi|300311967|ref|YP_003776059.1| precorrin-6y methylase
           methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 241

 Score =  424 bits (1089), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 200/241 (82%), Positives = 219/241 (90%)

Query: 1   MIICIGAGPGDIGYLTQRGAELIRDADVVAGFDAVVNVVQSIIPPTAEVILMNYRDQVAQ 60
           MIICIGAGPGD  YLT RGAELIR+ADVVAGF+AVV+VV+ +IP +A+V+LM YRDQVA+
Sbjct: 1   MIICIGAGPGDHSYLTLRGAELIRNADVVAGFNAVVDVVKDLIPASAQVVLMGYRDQVAK 60

Query: 61  LDLVAAAHHAGKRCVVVFMGDIHFSGFQYLERVERACGHPVETLPGISSAQILASRAKVC 120
           LD VAA HHAGKRCVVVFMGDIHFSGFQYLERVERACGH VETLPGISSAQILAS+A+VC
Sbjct: 61  LDEVAALHHAGKRCVVVFMGDIHFSGFQYLERVERACGHRVETLPGISSAQILASKARVC 120

Query: 121 FDETTFITFHRRGDLTPFKRHLVHVLNDGRNAIVIPCPWDAARSFMPRHIAAYLLENGVQ 180
           FDETTFITFHRRGDL PFKRHLVHVLNDGRNAIVIPCPWDAARSFMPRHIA YLL+ GV 
Sbjct: 121 FDETTFITFHRRGDLEPFKRHLVHVLNDGRNAIVIPCPWDAARSFMPRHIATYLLQQGVS 180

Query: 181 PDHPTEVWENLTRGDAEWHGSLAECVDKEFTDMSIMLIRTPTPMDSQIEPPPGVSTAPAE 240
           P+HPTEVWENLTRGDAEWHG LA+C + EF+DMSIMLIRT TPM SQIEPPP ++ + A 
Sbjct: 181 PEHPTEVWENLTRGDAEWHGKLADCAEVEFSDMSIMLIRTLTPMASQIEPPPAMTASGAS 240

Query: 241 A 241
           A
Sbjct: 241 A 241


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 773,134
Number of extensions: 29615
Number of successful extensions: 78
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 159
Effective length of database: 1,226,865
Effective search space: 195071535
Effective search space used: 195071535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)