BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0031.p
         (598 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311968|ref|YP_003776060.1| Mg-chelatase subunit ChlI prote...   768   0.0  

>gi|300311968|ref|YP_003776060.1| Mg-chelatase subunit ChlI protein
           [Herbaspirillum seropedicae SmR1]
          Length = 663

 Score =  768 bits (1983), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/616 (67%), Positives = 478/616 (77%), Gaps = 29/616 (4%)

Query: 1   VLPPVERVAGCAFNCLPGQPAEQCAVCRG--GAKTISANVPFVTLPLGATEDRVLGTLDL 58
           VLPP+ RVA CAFNC PGQPA  C +C G        A++PFVTLPLGATEDRVLG+LDL
Sbjct: 54  VLPPIARVAACAFNCAPGQPAAACTLCNGDNAPAAAPADLPFVTLPLGATEDRVLGSLDL 113

Query: 59  QRALKGEKNALQAGLLAAAHRGILYIDEVNLLPDHLVDVLLDVAAMGVNSVQREGLSVSH 118
           Q+AL+G + A Q GLLAAAHRGILYIDEVNLL DHLVDVLLDVAAMG+N+VQREGLSVSH
Sbjct: 114 QQALQGGQRAFQPGLLAAAHRGILYIDEVNLLADHLVDVLLDVAAMGINAVQREGLSVSH 173

Query: 119 PARFTLIGTMNLEEGDLRPQLLDRFGLMVEVVAPRDKTLRRLAYEADPAAXVRRRLAYEA 178
           PARFTLIGTMNLEEGDLRPQLLDRFGLMVEV AP DKT+R        A  VRRR+A+EA
Sbjct: 174 PARFTLIGTMNLEEGDLRPQLLDRFGLMVEVNAPTDKTVR--------AEVVRRRIAFEA 225

Query: 179 DPAAYAAQWRDEQEALCARIAAAQVLLSQVVLSDALLDLISHLCCEFEVASLRADIVMHK 238
           DPAA+A+QW+D Q+AL  ++A AQ LL +VVL DA+L+LISHLCCEFEVASLRADIVMHK
Sbjct: 226 DPAAFASQWQDRQDALRNQVAQAQRLLPEVVLDDAMLELISHLCCEFEVASLRADIVMHK 285

Query: 239 TARAFAALDGRTQVTPDDVRAAAELVLPHRRRRKPFEQPGLDQDKLDDLMQQAMPPERQD 298
           TARA AAL  R++VTPDDVR AA LVLPHRRRRKPFEQ G+DQDKLDDL+ QA  PE   
Sbjct: 286 TARAIAALQARSRVTPDDVREAALLVLPHRRRRKPFEQTGMDQDKLDDLIDQARTPEPPA 345

Query: 299 GNDQEQSDSS----------------SDGNDQSEGGDSQQMFAAASVGNARQLKVDAPVN 342
            +  E S  +                 D  DQ      QQ FA A+ G AR++ V A   
Sbjct: 346 PDAGEGSGEAPPQEPSPEQEQPEEGEQDQQDQPSEAGGQQTFAIAAAGQARKISVAA-PA 404

Query: 343 NVSTLAGRRSDAADATRGRMIRAVPDSNPASLAVGATLRSAVLRSAAEG-VEEGAVLQLQ 401
             S  +GRRS  ADA+RG  +RAVPD+NP  LA+GATLRSA +RSA  G  E G  L + 
Sbjct: 405 QASAASGRRSAVADASRGSAVRAVPDANPDRLAIGATLRSAAVRSALSGEAEPGERLAVS 464

Query: 402 AGDLHGKVKAGKTANLILFVVDASGSMAAQRRMEAVKGAVLALLTDVYQRRDQVAVIGFR 461
             DLH +V++G+ ANLI+FVVDASGSMAAQRRMEAVKGAVLALLTD YQRRDQ+AVI FR
Sbjct: 465 RADLHRQVRSGRGANLIVFVVDASGSMAAQRRMEAVKGAVLALLTDAYQRRDQLAVIAFR 524

Query: 462 GDKASVLLAPTRSVDLAEQGLRELPTGGRTPLPHALQLALQTLEQSAGVAPPLLVLLSDG 521
           G++A +LLAPTRS DLAEQGLRELPTGGRTPLPHALQLA Q L+Q++  APPLLV+LSDG
Sbjct: 525 GEQAQLLLAPTRSADLAEQGLRELPTGGRTPLPHALQLAAQVLQQASPEAPPLLVILSDG 584

Query: 522 KGNVALENG-GDPWRETLALAEQLAARGTPALVLDTETGYVRLGRAAQLAQALGAECMTL 580
           K NV+L    GD W +TL  A+ LAA+  PALVLDTE+GY+RLGRAAQLA+ALGA C+TL
Sbjct: 585 KANVSLPGSHGDAWAQTLEAADMLAAQAVPALVLDTESGYLRLGRAAQLAEALGAPCLTL 644

Query: 581 EELTADNLALTIRARM 596
           E+LT D LALT+RA++
Sbjct: 645 EQLTGDALALTVRAQL 660


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,608,202
Number of extensions: 63623
Number of successful extensions: 256
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 250
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 507
Effective length of database: 1,188,985
Effective search space: 602815395
Effective search space used: 602815395
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)