BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0029.p
         (764 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311969|ref|YP_003776061.1| cobalamin biosynthesis protein ...  1101   0.0  

>gi|300311969|ref|YP_003776061.1| cobalamin biosynthesis protein
            [Herbaspirillum seropedicae SmR1]
          Length = 1397

 Score = 1101 bits (2848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 588/779 (75%), Positives = 642/779 (82%), Gaps = 19/779 (2%)

Query: 1    VVDHLTPPMTTADSYGALAQLTQLVDEYYQVEVLDPSKLPLLQQQIWELVKQTNLDSDLQ 60
            VVDHLTPPMTTADSYGALAQLTQLVDEYYQVEVLDPSKLPLLQQQIWELV+QTNLD+DLQ
Sbjct: 614  VVDHLTPPMTTADSYGALAQLTQLVDEYYQVEVLDPSKLPLLQQQIWELVRQTNLDTDLQ 673

Query: 61   MKLLHHDHDHDDGHGHHHGHAHDHSHHDHDHHDHDHPHDHS-----------HEGELPEA 109
             KLLHHDHDHD  H H HGH HDH HH H H  H H H               EGELP A
Sbjct: 674  YKLLHHDHDHDHDHDHDHGHDHDHHHHHHGHAHHHHDHGDHAHHDHDHDHAHEEGELPHA 733

Query: 110  FSGMGGSDVAHLIEDLDGYLCELGAAQIRDGLHILGRAPDAAQMPDMLVSLTRLPNQDIP 169
             + + G+ VAHLIEDLDGYLCELGAAQIRDGLHILGR PD AQMPDMLV+LTRLPNQD+P
Sbjct: 734  LTELDGAGVAHLIEDLDGYLCELGAAQIRDGLHILGRTPDQAQMPDMLVALTRLPNQDLP 793

Query: 170  GLQEEMARLFGLKLDMLLENKGQRLNADSALARIAGRAVVTRADAIEAIDDLCVRLMQTL 229
            GLQEE+ARLFGL LDMLLE+KG+RLN D ALAR A R + TRADA+EAID LC+RLMQ L
Sbjct: 794  GLQEEVARLFGLSLDMLLEHKGRRLNIDDALARCADRPIATRADALEAIDALCLRLMQAL 853

Query: 230  QDSGYKADAIGGILQSMFGDLSI----DKPRLQTASLRHSGSVIG-QMKMQARARPPAAA 284
            Q+  +   AI  +L S+F  L       +PRLQ A  + + SV+G    M   A P    
Sbjct: 854  QEHDFAPTAIDRVLGSVFAALEQASPEQRPRLQPAMSQAATSVLGGMRAMARPAAPAPRR 913

Query: 285  PTIAKAAEPTADKFAALRRVLDFTCRQLLPNLHRAGDEIGNLLLGLEGGYVPAGPSGSPT 344
               A A    A    A+RRVL F C +L+P LHR  +EIGNLL GL GGY+PAGPSGSPT
Sbjct: 914  AAPASAPSRRAADTGAVRRVLAFACEELVPRLHRTSEEIGNLLNGLRGGYIPAGPSGSPT 973

Query: 345  RGMAHILPTGRNFYSVDPRSVPSQSAWRVGQQLAREVLERHWRETGAYPESVAISIWGTS 404
            RGMAHILPTGRNFYSVDPRSVPSQSAWRVGQQLAREVL+RH RETG YPESVAISIWGTS
Sbjct: 974  RGMAHILPTGRNFYSVDPRSVPSQSAWRVGQQLAREVLQRHHRETGHYPESVAISIWGTS 1033

Query: 405  AMRTHGDDVAQILCLLGVRPVWRPGNRQVSGIEVVPLQELQRPRIDVTTRISGFFRDAFP 464
            AMRTHGDDVAQIL L+G RP+WR GNRQV+G+E+VPL+ELQRPRIDVTTRISGFFRDAFP
Sbjct: 1034 AMRTHGDDVAQILWLMGARPLWRAGNRQVAGVELVPLEELQRPRIDVTTRISGFFRDAFP 1093

Query: 465  QLIDLIDDAVNAVIALDEPLDQNFVRKHYLQELGEWTGKGLDKDEAQERAAYRIFGAKPG 524
            QLI+LIDDAV   IA DEP   NFVRKHYL++L +  G GL + EA  +A+YR+FGAKPG
Sbjct: 1094 QLIELIDDAVQLAIAADEPETMNFVRKHYLRDLAQGMGAGLGQAEAAAQASYRVFGAKPG 1153

Query: 525  SYGAGILPLIQEKNWQTDADFAEAYINWGGYAYARKLGDKQGSDQRDAFRTRLSGVQVAL 584
            SYGAGILPLIQEKNWQ  ADFAEAYINWGG+AY RK+   QG+DQRDAFR RL+GVQVAL
Sbjct: 1154 SYGAGILPLIQEKNWQDQADFAEAYINWGGFAYGRKV---QGADQRDAFRQRLAGVQVAL 1210

Query: 585  HNQDNREHDIFDSDDYLQYHGGMIATIRALTGQQPRHYFGDSHDPARAQVRDLKQETLRV 644
            HNQDN EHDIFDSDDYLQYHGGMIATIRAL+GQQPRHYFGDSHDP RA VRDLK+ETLRV
Sbjct: 1211 HNQDNHEHDIFDSDDYLQYHGGMIATIRALSGQQPRHYFGDSHDPQRAAVRDLKEETLRV 1270

Query: 645  FRSRVVNPKWLDSIQRHGYKGGLELTATVDYLFGYDATAQVMDDWMYEQLAQTYAFDPGM 704
            FR+RVVNPKWL SIQRHGYKGGLEL+ATVDYLFGYDATAQV+DDWMY+QLA+TY FDP M
Sbjct: 1271 FRARVVNPKWLASIQRHGYKGGLELSATVDYLFGYDATAQVLDDWMYQQLAETYGFDPAM 1330

Query: 705  QRFLEEANPWAQNAIAERLLEAASRGMWAEPQAQTLEDLRQLYLKSETLLEARGETPRG 763
            ++FLEEANPWAQNAIAERLLEAASRGMW  P AQTLE LRQLYL SETLLEARGET RG
Sbjct: 1331 RQFLEEANPWAQNAIAERLLEAASRGMWQAPDAQTLERLRQLYLHSETLLEARGETVRG 1389


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,344,866
Number of extensions: 99669
Number of successful extensions: 291
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 287
Number of HSP's successfully gapped: 1
Length of query: 764
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 671
Effective length of database: 1,179,515
Effective search space: 791454565
Effective search space used: 791454565
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 134 (56.2 bits)