BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0017.p
         (549 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311975|ref|YP_003776067.1| phosphoglucomutase [Herbaspiril...   860   0.0  

>gi|300311975|ref|YP_003776067.1| phosphoglucomutase [Herbaspirillum
           seropedicae SmR1]
          Length = 549

 Score =  860 bits (2223), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/548 (73%), Positives = 466/548 (85%)

Query: 1   MSSISPLAGQRAATSSLVDVPGLVTSYYSLRPDAGIAPHQVAFGTSGHRGSSLNYSFNEW 60
           MSS++PLAGQRAA S+LVD+P LV++YYSLRPD   A H+VAFGTSGHRG++  +SFNEW
Sbjct: 1   MSSVNPLAGQRAAPSALVDLPVLVSNYYSLRPDVAEASHRVAFGTSGHRGNANAHSFNEW 60

Query: 61  HVLAITQAICDYRAESSISAPLFIGIDTHALSAPAFASALEVLAANGVQTMVSRGTPYTP 120
           HVLAITQAICDYR E     PLF+GIDTHALS PA+ SALEVLAAN V TM++ G+PY P
Sbjct: 61  HVLAITQAICDYRKEQGFKGPLFLGIDTHALSEPAWHSALEVLAANEVVTMLAEGSPYAP 120

Query: 121 TPAISHAILMHNRMHPLAQADGIVITPSHNPPDNGGFKYNTPNGGPADTNVTNWIEKRAN 180
           TPA+SHAIL HNR+H  A ADGIV+TPSHNPPDNGGFKYN PNGGP+D+NVT WIE+RAN
Sbjct: 121 TPAVSHAILTHNRVHRDALADGIVVTPSHNPPDNGGFKYNMPNGGPSDSNVTGWIEQRAN 180

Query: 181 VYLQNAVRDVKRIPYDRAVRAASTHQYDYLETYINDLPGIIDLNAIRDAGISIGVDPLGG 240
            YL+  ++ V+R+ +++A++A +T +YDYL+ Y++DLP IIDL AI  A + IGVDPLGG
Sbjct: 181 AYLEQQLQGVRRVSFEKALKADTTRRYDYLDNYVSDLPNIIDLAAISGANVKIGVDPLGG 240

Query: 241 AGVHYWGAIADRYDLKLTVVNKEVDPTFRFVPMDWDAQIRMDPSSQYAMRELISLKDKFD 300
           AG+HYW AIADRY L L VVN EVD TFRFVP+DWDAQIRMDPSS +AM ELI+LKD+FD
Sbjct: 241 AGLHYWSAIADRYKLNLEVVNTEVDATFRFVPLDWDAQIRMDPSSPHAMSELIALKDRFD 300

Query: 301 IAFACDTDHDRHGIVTKSVGLMPSNHYLSAAVSYLFRHRPEWRADTGVGKTLVSSQMIDR 360
           +A ACDTDHDRHGIV KS GLMP+N YLS AV YLFRHRP WRAD  +GKTLVSSQMI+R
Sbjct: 301 VAMACDTDHDRHGIVAKSRGLMPANDYLSVAVYYLFRHRPAWRADAAIGKTLVSSQMINR 360

Query: 361 VAAQLHRPLQEMPIGFKWFVDGLQDGSLGFGCEESAGASFLRFDGTPWSTDKDGITAALL 420
           VA  L R L EMP+GFKWFVDGL DGSL FGCEESAGASF+RFDG PWSTDKDGITAALL
Sbjct: 361 VAKHLERKLLEMPVGFKWFVDGLYDGSLAFGCEESAGASFVRFDGQPWSTDKDGITAALL 420

Query: 421 AAEMTARTGRDPGEIYQDLTDQLGLPCNGRIEAAATPEQKKLLSKLSAENVRSTQLAGEE 480
           AAEMTARTG DPG+IY+DLT QLG P NGR EAAATPEQK  LSKLS ++V ST+LAGE 
Sbjct: 421 AAEMTARTGNDPGQIYEDLTHQLGAPLNGRKEAAATPEQKARLSKLSPQDVSSTELAGEP 480

Query: 481 IRQILTTAPANDKAFGGVKIVSDNGWFAARPSGTESIYKIYAESFRDETHLESIFAEAQE 540
           IR++LTTAPAN K FGG+KIV+DNGWFAARPSGTESIYKIY ESFRD+ HL+ IFAEAQ+
Sbjct: 481 IREVLTTAPANGKPFGGLKIVTDNGWFAARPSGTESIYKIYGESFRDQAHLDKIFAEAQD 540

Query: 541 IVSAALAA 548
           IV+ AL A
Sbjct: 541 IVTRALQA 548


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,832,166
Number of extensions: 81739
Number of successful extensions: 220
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 220
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 459
Effective length of database: 1,193,720
Effective search space: 547917480
Effective search space used: 547917480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)