BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0013.p
         (313 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311483|ref|YP_003775575.1| UTP-glucose-1-phosphate uridyly...   456   e-130
gi|300311978|ref|YP_003776070.1| UTP-glucose-1-phosphate uridyly...   432   e-122

>gi|300311483|ref|YP_003775575.1| UTP-glucose-1-phosphate
           uridylyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 297

 Score =  456 bits (1174), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 222/293 (75%), Positives = 253/293 (86%), Gaps = 3/293 (1%)

Query: 1   MKKITKAVFPVAGLGSRFLPATKAQPKEMLPIVDKPLIQYAVEEAVAAGITEMIFITGRN 60
           +KKI KAVFPVAGLGSRFLPATKAQPKEMLPIVDKPLI YAVEEAVAAGITEM+FITGRN
Sbjct: 3   IKKIKKAVFPVAGLGSRFLPATKAQPKEMLPIVDKPLIHYAVEEAVAAGITEMVFITGRN 62

Query: 61  KRAIEDHFDTAYELETELEAAGKTKLLEFARNVIPKHVNCVYIRQSAPLGLGHAVLCAKP 120
           KRAIEDHFD AYELE+ELEAAGK KLLE  +NV+PK VNC++IRQS PLGLGHAVLCA+P
Sbjct: 63  KRAIEDHFDKAYELESELEAAGKKKLLEIVQNVVPKSVNCIFIRQSVPLGLGHAVLCARP 122

Query: 121 LVGDEPFAVVLADDFMDAPEGGKNVLAQMLDVFETEQKSLLAVQDVPRSDTRQYGIVSTG 180
           +VG+EPFAV+LADDFMD   G K VLAQM +++E E  S+LAVQ+VP+SDT+QYGIVS  
Sbjct: 123 VVGEEPFAVLLADDFMDTDAGVKPVLAQMTEIYEREGMSMLAVQEVPQSDTKQYGIVSAT 182

Query: 181 PGSAHSDRLDVISGIVEKPAPDVAPSTLAVVGRYVLTPGIFERLENIGKGAGGEIQLTDG 240
           P   +   L+ ++ IVEKPAP+ APSTLAVVGRYVL   IF+ LENIG+GAGGEIQLTDG
Sbjct: 183 P---YQPNLERVNAIVEKPAPEEAPSTLAVVGRYVLNNRIFDYLENIGRGAGGEIQLTDG 239

Query: 241 IADLMRDETILAYRYEGQRYDCGSKLGYLKATVAMGAKHAEVGKEFSEYLHEV 293
           IA LM+ E++LAYRY+GQRYDCGSKLGYLKATVAMG KH E G  FSE+L +V
Sbjct: 240 IAKLMQAESVLAYRYQGQRYDCGSKLGYLKATVAMGMKHPETGAAFSEFLKDV 292


>gi|300311978|ref|YP_003776070.1| UTP-glucose-1-phosphate
           uridylyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 307

 Score =  432 bits (1110), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 212/277 (76%), Positives = 238/277 (85%), Gaps = 3/277 (1%)

Query: 29  MLPIVDKPLIQYAVEEAVAAGITEMIFITGRNKRAIEDHFDTAYELETELEAAGKTKLLE 88
           MLPIVDKPLIQYAVEEAV AGITEMIFITGRNKRAIEDHFD AYELE+ELEAAGK KLLE
Sbjct: 1   MLPIVDKPLIQYAVEEAVEAGITEMIFITGRNKRAIEDHFDKAYELESELEAAGKVKLLE 60

Query: 89  FARNVIPKHVNCVYIRQSAPLGLGHAVLCAKPLVGDEPFAVVLADDFMDAPEGGKNVLAQ 148
             R+V+PKH+NCVY+RQ+ PLGLGHAVL AKPLVGDEPFAV+LADDFMD   G KNV+AQ
Sbjct: 61  TIRHVVPKHINCVYVRQAEPLGLGHAVLLAKPLVGDEPFAVLLADDFMDVDAGQKNVMAQ 120

Query: 149 MLDVFETEQKSLLAVQDVPRSDTRQYGIVSTGPGSAHSDRLDVISGIVEKPAPDVAPSTL 208
           M  +FE E KSLLAVQDVPR +TRQYGIVS   GSA++DRL+++SGIVEKPAP+ APSTL
Sbjct: 121 MTAMFEREGKSLLAVQDVPRPETRQYGIVS---GSAYADRLELMSGIVEKPAPEEAPSTL 177

Query: 209 AVVGRYVLTPGIFERLENIGKGAGGEIQLTDGIADLMRDETILAYRYEGQRYDCGSKLGY 268
           AVVGRYVLTP IFERLENIG GAGGEIQLTD I+ L++ E ILAYRYEGQR+DCGSKLGY
Sbjct: 178 AVVGRYVLTPAIFERLENIGTGAGGEIQLTDAISALLQQEQILAYRYEGQRFDCGSKLGY 237

Query: 269 LKATVAMGAKHAEVGKEFSEYLHEVHAAEEEKSIAQP 305
           LKA VAMG KH EVG  F+++L +  A  + +  AQP
Sbjct: 238 LKAAVAMGFKHKEVGSGFAQFLQDFAAQHDLQQAAQP 274


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.135    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 983,795
Number of extensions: 42418
Number of successful extensions: 125
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 3
Length of query: 313
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 228
Effective length of database: 1,217,395
Effective search space: 277566060
Effective search space used: 277566060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)