BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0009.p
         (177 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311979|ref|YP_003776071.1| hypothetical protein Hsero_2667...   130   9e-32

>gi|300311979|ref|YP_003776071.1| hypothetical protein Hsero_2667
           [Herbaspirillum seropedicae SmR1]
          Length = 136

 Score =  130 bits (326), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 71/96 (73%), Positives = 79/96 (82%), Gaps = 3/96 (3%)

Query: 83  VKPVTKPI-AKAVAKIEKKAELKLKKVKQVRDSFTMPETEYEVLGQVKKACLKAGFEIKK 141
           V+ + KP+ A+   KIEK A  K KKVKQVRDSFTMPE EY VL QVKK+CLKAG EIKK
Sbjct: 43  VEKIEKPVKAEKTEKIEKAA--KPKKVKQVRDSFTMPENEYAVLAQVKKSCLKAGVEIKK 100

Query: 142 SDLLRIGVSLIKNLETGKLKTLLAGLTPLKVGRPKK 177
           SDLLRIGVSLIKNL+  +LK +LAGLTPLKVGRPKK
Sbjct: 101 SDLLRIGVSLIKNLKIAELKDILAGLTPLKVGRPKK 136


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.311    0.125    0.330 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 212,517
Number of extensions: 3771
Number of successful extensions: 56
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 2
Length of query: 177
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 98
Effective length of database: 1,245,805
Effective search space: 122088890
Effective search space used: 122088890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 127 (53.5 bits)