BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0005.p
         (166 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311980|ref|YP_003776072.1| Fe-S protein [Herbaspirillum se...   102   1e-23

>gi|300311980|ref|YP_003776072.1| Fe-S protein [Herbaspirillum
           seropedicae SmR1]
          Length = 280

 Score =  102 bits (254), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/144 (43%), Positives = 77/144 (53%), Gaps = 16/144 (11%)

Query: 1   MITLSALHIYPIKSCRGISLPQAAVGEFGLNLDRSWMLVDSDGHFLSQREHGRMATISTA 60
           M  LSA+H+YPIKSC G+SL    +G  GL LDR WMLVD  G FL+QR+H  MA I+ A
Sbjct: 1   MSILSAIHLYPIKSCAGLSLTHTPIGPLGLALDRHWMLVDRQGRFLTQRQHPEMACITPA 60

Query: 61  LEHDTPALLTVRAPGMADLHLPSRIEDGAGRLAVTIWDDGVEALDCGAPLPIAGFRITCR 120
            E +    L +RAPGM  L L  + EDG   LAV +W+  ++ALD G            +
Sbjct: 61  FEGER---LVLRAPGMPALSLSMQGEDGEA-LAVQVWNSHLDALDQG------------Q 104

Query: 121 PRCGWCVSIRRPGASAVRAGPATS 144
               WC          VR  PA S
Sbjct: 105 TAAQWCSDYLGEAVRLVRFNPAAS 128


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.138    0.472 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 613,037
Number of extensions: 26350
Number of successful extensions: 88
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 88
Effective length of database: 1,250,540
Effective search space: 110047520
Effective search space used: 110047520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 127 (53.5 bits)