BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0003.p (410 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311875|ref|YP_003775967.1| aspartate/tyrosine/aromatic ami... 755 0.0 gi|300311478|ref|YP_003775570.1| succinyldiaminopimelate aminotr... 127 1e-30 gi|300312878|ref|YP_003776970.1| aspartate/tyrosine/aromatic ami... 119 6e-28 gi|300311409|ref|YP_003775501.1| aspartate aminotransferase [Her... 114 1e-26 gi|300312316|ref|YP_003776408.1| pyridoxal phosphate dependent a... 107 1e-24 >gi|300311875|ref|YP_003775967.1| aspartate/tyrosine/aromatic aminotransferase [Herbaspirillum seropedicae SmR1] Length = 431 Score = 755 bits (1950), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/392 (92%), Positives = 376/392 (95%) Query: 7 PRSFARIDRLPPYVFNITAELKMAARRRGEDIIDMSMGNPDGATPPHIVEKLVEVAQRPD 66 P SF RI+RLPPYVFNITAELKMAARRRGEDIIDMSMGNPDGATPPHIVEKLVEVAQRPD Sbjct: 38 PVSFPRIERLPPYVFNITAELKMAARRRGEDIIDMSMGNPDGATPPHIVEKLVEVAQRPD 97 Query: 67 THGYSASKGIPRLRRAIAHWYKSRYDVEFNPDSEAIVTIGSKEGLAHLMLATLDKGDTVL 126 THGYS+SKGIPRLRRAIAHWY+SRY+V+F+PDSEAIVTIGSKEGLAHLMLATLDKGDTVL Sbjct: 98 THGYSSSKGIPRLRRAIAHWYRSRYEVDFDPDSEAIVTIGSKEGLAHLMLATLDKGDTVL 157 Query: 127 VPNPSYPIHIYGAVIAGADIRSVRMSPDVDFFSELERAIRESYPKPKMMVLGFPSNPTAQ 186 VPNPSYPIHIYGAVIAGA+IRSVRMSP VDFF ELERA+RESYPKPKMM+LGFPSNPTAQ Sbjct: 158 VPNPSYPIHIYGAVIAGANIRSVRMSPGVDFFDELERAVRESYPKPKMMILGFPSNPTAQ 217 Query: 187 CVELEFFERVIKLAREHNILVVHDLAYADITFDGWKAPSIMQVEGAREVAVEFFTLSKSY 246 CVELEFFERV+KLAREH ILVVHDLAYADITFDGWKAPSIMQV GAREVAVEFFTLSKSY Sbjct: 218 CVELEFFERVVKLAREHQILVVHDLAYADITFDGWKAPSIMQVPGAREVAVEFFTLSKSY 277 Query: 247 NMAGWRIGFMVGNKELVAALARIKSYHDYGSFTPVQVAAIAALEGDQSCVEEIRANYESR 306 NMAGWRIGFMVGN LVAALARIKSYHDYGSFTPVQVAAIAALEGDQSCVEEIRANYE R Sbjct: 278 NMAGWRIGFMVGNARLVAALARIKSYHDYGSFTPVQVAAIAALEGDQSCVEEIRANYERR 337 Query: 307 RNVLVKGLHEAGWMVDVPKASMYIWARIPEAYRHLGSLEFARQLLEKAKVCVSPGIGFGE 366 RNVLVKGLHEAGWMVDVPKASMYIWARIPE YR GSLEFAR LLE+AKVCVSPGIGFGE Sbjct: 338 RNVLVKGLHEAGWMVDVPKASMYIWARIPEPYRQFGSLEFARILLEQAKVCVSPGIGFGE 397 Query: 367 YGDEYVRFALIENEARIRQAIRGIKAMLRGEK 398 YGDEYVRFALIENE+RIRQAIRGIKAM + K Sbjct: 398 YGDEYVRFALIENESRIRQAIRGIKAMFKNAK 429 >gi|300311478|ref|YP_003775570.1| succinyldiaminopimelate aminotransferase [Herbaspirillum seropedicae SmR1] Length = 420 Score = 127 bits (320), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 96/360 (26%), Positives = 173/360 (48%), Gaps = 18/360 (5%) Query: 13 IDRLPPYVFNITAELKMA-ARRRGEDIIDMSMGNPDGATPPHIVEKLVEVAQRPDTHGYS 71 +D+L PY F +L I + +G P TP I + L++ Y Sbjct: 22 LDQLQPYPFEKLKKLFAGITPDPAYRPISLGIGEPKHPTPAFIQQALID--NLAGLASYP 79 Query: 72 ASKGIPRLRRAIAHWYKSRYDV-EFNPDSEAIVTIGSKEGLAHLMLATLDK---GDTVLV 127 A+ G LR AIA W + RYD+ +P +E + GS+E L L +D G V+ Sbjct: 80 ATLGSDALRGAIADWLQKRYDIPRPDPATEILPVNGSREALFSLTQTVVDPTRPGALVMC 139 Query: 128 PNPSYPIHIYGAVIAGADIRSVRMSPDVDFFSELERAIRESYPKPKMMVLGFPSNPTAQC 187 PNP Y I+ A +AGA V P +F + + ++ + + +++ + P NPT Sbjct: 140 PNPFYQIYEGSAYLAGAQPYFVNSDPKRNFAPDFSQVPQDVWERVQLLFVCSPGNPTGAV 199 Query: 188 VELEFFERVIKLAREHNILVVHDLAYADITFDGWKAPSIMQVEGAREVA------VEFFT 241 + LE ++ + L+ + ++ D Y++I F+ + P + ++ AR + + F + Sbjct: 200 LTLEDWKELFALSDRYGFVIASDECYSEIYFN--EDPPLGGMQAARLLGRDYRRLISFSS 257 Query: 242 LSKSYNMAGWRIGFMVGNKELVAALARIKSYHDYGSFTPVQVAAIAALEGDQSCVEEIRA 301 LSK N+ G R GF+ G+ ++ ++YH +Q A++ A + D++ V+ A Sbjct: 258 LSKRSNVPGMRSGFVAGDAAILKKFLLYRTYHGAAMSPVIQAASVLAWQ-DETHVQGNIA 316 Query: 302 NYESRRNVLVKGLHEAGWMVDVPKASMYIWARIPEAYRHLGSLEFARQLLEKAKVCVSPG 361 Y ++ + + L E V +P A+ Y+WA++ + ++ EFA++L + V V PG Sbjct: 317 KYVTKFSQVTPLLQEV-LEVALPDAAFYLWAKV-DKLVNISDTEFAQRLYAEYNVTVLPG 374 >gi|300312878|ref|YP_003776970.1| aspartate/tyrosine/aromatic aminotransferase [Herbaspirillum seropedicae SmR1] Length = 393 Score = 119 bits (297), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 104/399 (26%), Positives = 187/399 (46%), Gaps = 23/399 (5%) Query: 11 ARIDRLPPYVFNITAELKMAA--RRRGEDIIDMSMGNPDGATPPHIVEKLVEVAQRPDTH 68 AR+ + P F++ K AA ++G +I M +G PD PP +VE A R T Sbjct: 8 ARLQHIAP--FHVMELSKKAAVLEQQGRHLIHMGIGEPDFTAPPAVVE----AATRAMTE 61 Query: 69 G---YSASKGIPRLRRAIAHWYKSRYDVEFNPDSEAIVTIGSKEGLAHLMLATLDKGDTV 125 G Y+++ G+P+LR AI+ Y+S Y +E P+ +VT G+ L A +++ V Sbjct: 62 GKMQYTSATGLPQLRAAISDHYRSVYGLEIAPE-RIVVTAGASAALLLACAALVERDSEV 120 Query: 126 LVPNPSYPIHIYGAVIAGADIRSVRMSPDVDFFSELERAIRESY-PKPKMMVLGFPSNPT 184 L+P+PSYP + + + + P+ F + +RE + + ++L PSNPT Sbjct: 121 LMPDPSYPCNRHFVAAFEGRAKLIASGPE-HRFQLSAQMVREHWGSATRGVLLASPSNPT 179 Query: 185 AQCVELEFFERVIKLAREHNILVVHDLAYADITFDGWKAPSIMQVEGAREVAVEFFTLSK 244 + + ++ R+ + D Y ++++G AP G V + F SK Sbjct: 180 GTSILPDELRAIVGEVRQRGGFTIVDEIYQGLSYEG--APFSALSLGDDVVVINSF--SK 235 Query: 245 SYNMAGWRIGFMVGNKELVAALARIKSYHDYGSFTPVQVAAIAALEGDQ-SCVEEIRANY 303 +NM GWR+G++V LV + ++ + + Q AA+A + EE +A + Sbjct: 236 YFNMTGWRLGWLVLPPALVPQVEKLAQNLLICASSIAQHAAVACFTPQTLALYEERKAEF 295 Query: 304 ESRRNVLVKGLHEAGWMVDV-PKASMYIWARIPEAYRHLGSLEFARQLLEKAKVCVSPGI 362 + RR+ +V L G+ V V P + Y++A L +L +A V + PG+ Sbjct: 296 KRRRDYIVPALESLGFTVPVMPDGAFYVYADCSALADDADQLSL--DMLNEAGVVLVPGL 353 Query: 363 GFGEY-GDEYVRFALIENEARIRQAIRGIKAMLRGEKEA 400 FG + Y+R + + +++A+ ++ ++A Sbjct: 354 DFGPFTARRYIRLSYATSMENLQEAVARLRVFFEKRRKA 392 >gi|300311409|ref|YP_003775501.1| aspartate aminotransferase [Herbaspirillum seropedicae SmR1] Length = 409 Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 103/405 (25%), Positives = 186/405 (45%), Gaps = 21/405 (5%) Query: 8 RSFARIDRLPPYVFNITAELKMAARR---RGEDIIDMSMGNPDG---ATPPHIVEKLVEV 61 R + +L ++I + AR+ G II +++GN P IV+ ++ Sbjct: 2 RPIQKSKKLADVCYDIRGPVLEKARQMEEEGHKIIKLNIGNLAAFGFDAPDEIVQDMIR- 60 Query: 62 AQRPDTHGYSASKGIPRLRRAIAHWYKSRYDVEFNPDSEAIVTIGSKEGLAHLMLATLDK 121 + GY+ SKG+ R+++ H Y + +E + + G+ E + + A L+ Sbjct: 61 -NMGNASGYTDSKGLFAPRKSVMH-YTQQKKIEGVTIDDIYLGNGASELIVMSVNALLNT 118 Query: 122 GDTVLVPNPSYPIHIYGAVIAGADIRSVRMSPDVDFFSELERAIRESYPKPKMMVLGFPS 181 GD VLVP+P YP+ ++G + ++ ++ P K +V+ P+ Sbjct: 119 GDEVLVPSPDYPLWTAAVSLSGGTPVHYVCDEQQGWQPDIADIKKKITPNTKAIVVINPN 178 Query: 182 NPTAQCVELEFFERVIKLAREHNILVVHDLAYADITFDGWKAPSIMQVEGAREVA-VEFF 240 NPT +E + +I+LAR+H ++++ D Y + +DG S+ + A +V + F Sbjct: 179 NPTGALYSVEVLKEIIELARQHQLIILADEIYDKVLYDGNTHTSLASL--ADDVLFITFN 236 Query: 241 TLSKSYNMAGWRIGFMVGNKELVAALARIKSYHDYGSF-----TPVQVAAIAALEGDQSC 295 LSK+Y G+R G+MV + E A I+ + S P Q A AL G QS Sbjct: 237 GLSKNYRSCGYRAGWMVVSGEKKHARDYIEGLNMLASMRLCANAPGQFAIQTALGGYQSI 296 Query: 296 VEEI--RANYESRRNVLVKGLHE-AGWMVDVPKASMYIWARI-PEAYRHLGSLEFARQLL 351 + + + +R++ + L + G PK+++Y++ R+ PE Y EFA +LL Sbjct: 297 NDLVGPQGRLTKQRDLAHQLLTDIPGVSCVKPKSALYMFPRLDPEIYPIKDDQEFAYELL 356 Query: 352 EKAKVCVSPGIGFGEYGDEYVRFALIENEARIRQAIRGIKAMLRG 396 + KV + G GF ++ R + N + +++ I L G Sbjct: 357 AEEKVLIVQGTGFNCPTPDHFRVVFLPNTDDLTESMGRIAHFLEG 401 >gi|300312316|ref|YP_003776408.1| pyridoxal phosphate dependent aspartate/tyrosine/aromatic aminotransferase [Herbaspirillum seropedicae SmR1] Length = 385 Score = 107 bits (268), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 89/386 (23%), Positives = 168/386 (43%), Gaps = 11/386 (2%) Query: 6 SPRSFARIDRLPPYVFNITAELKMAARRRGEDIIDMSMGNPDGATPPHIVEKLVEVAQRP 65 +P ++ ++ +F + + L A +G +++ G PD P +V + + Q Sbjct: 3 TPNIVTKLPKVGTTIFTVMSAL---ASEKGA--VNLGQGFPDFHCDPALVAAVTQAMQE- 56 Query: 66 DTHGYSASKGIPRLRRAIAHWYKSRYDVEFNPDSEAIVTIGSKEGLAHLMLATLDKGDTV 125 + Y G+P LR AIA + Y ++P SE VT G+ +G+ +L + GD V Sbjct: 57 GLNQYPPMAGVPVLREAIAEKVEKLYGHRYDPVSEITVTAGATQGILTSVLCAVHPGDEV 116 Query: 126 LVPNPSYPIHIYGAVIAGADIRSVRMSPDVDFFS-ELERAIRESYPKPKMMVLGFPSNPT 184 +V P Y ++ +AG V+M +S ++ PK +M+++ P NPT Sbjct: 117 IVIEPVYDCYVPAIELAGGVPVFVQMEVGAQGYSIPWDKVKAAVTPKTRMIMVNTPHNPT 176 Query: 185 AQCVELEFFERVIKLAREHNILVVHDLAYADITFDGWKAPSIMQVEGAREVAVEFFTLSK 244 + + + R +IL++ D Y + +DG S+ + E + + K Sbjct: 177 GSVMRAADVAALADIVRGTDILILSDEVYEHMVYDGQPHESLARHPELAERSFINSSFGK 236 Query: 245 SYNMAGWRIGFMVGNKELVAALARIKSYHDYGSFTPVQVAAIAALEGDQSCVEEIRANYE 304 +Y++ GW++G++ L A ++ ++ + TPVQ +AA D + ++ A Y+ Sbjct: 237 TYHVTGWKVGYVAAPAALTAEFRKVHQFNVFTVNTPVQY-GLAAYMKDPAPYLDLPAFYQ 295 Query: 305 SRRNVLVKGLHEAGWMVDVPKASMYIWARIPEAYRHLGSLEFARQLLEKAKVCVSPGIGF 364 +R++ GL + + +P Y A L EF + L + V P F Sbjct: 296 HKRDLFRTGLANTRFEL-LPSQGTYFQCVKYGAISALPEAEFCKWLTSEIGVAAIPVSAF 354 Query: 365 GEYGDE--YVRFALIENEARIRQAIR 388 E VRF + + ++ A+ Sbjct: 355 YNTPRESGIVRFCFAKKDETLQLALE 380 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.136 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,298,303 Number of extensions: 54694 Number of successful extensions: 218 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 210 Number of HSP's successfully gapped: 11 Length of query: 410 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 323 Effective length of database: 1,207,925 Effective search space: 390159775 Effective search space used: 390159775 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)