BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0164.p
         (266 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312017|ref|YP_003776109.1| multidrug resistance B (translo...    69   5e-13
gi|300312486|ref|YP_003776578.1| major facilitator superfamily p...    66   4e-12

>gi|300312017|ref|YP_003776109.1| multidrug resistance B
           (translocase) transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 524

 Score = 68.6 bits (166), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 4/157 (2%)

Query: 47  GFSALDIGLAIFATGLFQICAIPFYTYLGRRVDLRWLMMFGMACFALSMWNFTPITHDWG 106
           G+ ++D GL+    G+F +  +P        VD R +       FA+  W  +       
Sbjct: 310 GYRSIDSGLSTAPIGIFAVILMPLIGRFLPLVDARKVATASFIGFAIVFWLRSRYNLQVD 369

Query: 107 WRELLLPQALRGFAQQFAVAPVVTLTLGALKPERLKQASGLFNLMRNLGGAIGIAVCGTI 166
              ++LP  L+G        P+  L L  L PER+  A+GL + +R   GA+G ++  T 
Sbjct: 370 QMTVILPTLLQGIPTAMFFVPLTVLLLSGLPPERIPAAAGLSSFVRVFCGAVGTSISTTA 429

Query: 167 LNDRTNLHFLRLAEHLNSAN----ESMNNLLQNTGAN 199
            N+R+ +H  +L EH    +    E++NNL    G N
Sbjct: 430 WNNRSIMHHAQLTEHATPYSPWLQETVNNLSSTLGLN 466


>gi|300312486|ref|YP_003776578.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 514

 Score = 65.9 bits (159), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 110/224 (49%), Gaps = 20/224 (8%)

Query: 42  LAHVRGFSALDIGLAIFATGLFQICAIPFYTYLGRRVDLRWLMMFGMACFALSMW---NF 98
           L+ + G+++L  G  +  +G+  I  +PF   L R VD+R  +  G    A S +   + 
Sbjct: 299 LSGIAGYNSLQSGWIVLLSGVPMILMMPFTPLLMRLVDIRIAVGTGFLLLAASAFIETDL 358

Query: 99  TPITHDWGWRELLLPQALRGFAQQFAVAPVVTLTLGALKPERLKQASGLFNLMRNLGGAI 158
           +P+++       +  Q +RG     A+  +    + ++ P +   ASGL++  RNLGG++
Sbjct: 359 SPLSYG---GSFVASQLMRGVGTVLAMLFLNQAAIRSVPPSQAGDASGLYSAARNLGGSL 415

Query: 159 GIAVCGTILNDRTNLHFLRLAEHLNSANESMNNLLQNTGANMLAWG-LDGGSAPTGALQQ 217
            +A    I + R  LH  RL E LN AN   ++L+Q+   +M A G L GG     ALQ 
Sbjct: 416 ALAAIAVIQDQRLWLHSRRLEESLN-AN---SDLVQS---SMTAQGHLLGGQDV--ALQL 466

Query: 218 LWKLTMREAQTQTFADAF----LAVMACFLVAIVLIPLMHKVAP 257
           +      +A T T+AD F    +A++    + + L PL    AP
Sbjct: 467 MGATIQSQALTMTYADLFWMLGVAILCVTPLVLFLRPLPTHAAP 510


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.139    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 842,788
Number of extensions: 33727
Number of successful extensions: 125
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 2
Length of query: 266
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 182
Effective length of database: 1,222,130
Effective search space: 222427660
Effective search space used: 222427660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 130 (54.7 bits)