BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0162.p
         (133 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313901|ref|YP_003777993.1| hypothetical protein Hsero_4619...   191   2e-50

>gi|300313901|ref|YP_003777993.1| hypothetical protein Hsero_4619
           [Herbaspirillum seropedicae SmR1]
          Length = 315

 Score =  191 bits (484), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 95/125 (76%), Positives = 102/125 (81%)

Query: 1   MEALRTRIEASVISISRPPGSPDFRLPKGDPGLFGPDSACWQVHSDFTSMLIGGIGALLL 60
           ME LR RIEA+V+SISR PGS DF  P GDPGLFGPDSA WQVHSDFT+ML GG+ ALLL
Sbjct: 24  MEFLRQRIEATVLSISRGPGSADFLQPPGDPGLFGPDSAAWQVHSDFTAMLTGGVAALLL 83

Query: 61  QMLHPLPLAGVWDHSTFQQDMLGRLRGTAQFIAGTTFGSSADAARLIERVRRIHAGVRAR 120
           QMLHPLPLAGVWDHS FQ DMLGRLR TAQF+AGTTFGS ADA RLI RV++IH GV   
Sbjct: 84  QMLHPLPLAGVWDHSNFQADMLGRLRRTAQFVAGTTFGSRADAERLIARVKQIHLGVNGV 143

Query: 121 RTDAR 125
             D R
Sbjct: 144 AADGR 148


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.140    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 413,412
Number of extensions: 14834
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 1
Length of query: 133
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 58
Effective length of database: 1,264,745
Effective search space: 73355210
Effective search space used: 73355210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 125 (52.8 bits)