BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0157.p
         (229 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313899|ref|YP_003777991.1| RND family efflux transporter M...   255   2e-69
gi|300309820|ref|YP_003773912.1| acriflavin resistance lipoprote...    62   5e-11
gi|300313894|ref|YP_003777986.1| RND family efflux transporter M...    56   2e-09

>gi|300313899|ref|YP_003777991.1| RND family efflux transporter MFP
           subunit [Herbaspirillum seropedicae SmR1]
          Length = 406

 Score =  255 bits (651), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 120/173 (69%), Positives = 150/173 (86%), Gaps = 2/173 (1%)

Query: 46  RALFLLSQTDPLRVYINVPQSYSNLIKQGQKVVVTQTELRGQKFDGKVARTAASIDTTTR 105
           RALF+LSQTDPLRVY+NVPQSY+NL+K GQ+V VTQ+ELRG+KF+GKVARTA +ID  TR
Sbjct: 231 RALFVLSQTDPLRVYVNVPQSYANLVKPGQQVTVTQSELRGRKFEGKVARTAGAIDAATR 290

Query: 106 TMQVEVSLPNPDGALMPGAFVQVALPLKPSGALVVSTDVLLFRRDGAMVAAVDAGNKIRL 165
           +MQVEV+L N D AL+PGAFVQVALP+KPSGAL+V+ D L+FRRDG +VAAVD  N++RL
Sbjct: 291 SMQVEVTLSNADHALLPGAFVQVALPIKPSGALLVAADTLMFRRDGTLVAAVDPHNQVRL 350

Query: 166 KRVQLGRNFGQSVEVLEGINGDERLILNPSDSVAEGDEVSVAAETAAPKDKDK 218
           K+++LGRNFGQ+VEVL+G+ GDE LILNPSD++AEGD+V    E   PK+ +K
Sbjct: 351 KKLRLGRNFGQTVEVLDGLQGDEHLILNPSDALAEGDQVEPTLEQ--PKEPEK 401


>gi|300309820|ref|YP_003773912.1| acriflavin resistance lipoprotein
           A [Herbaspirillum seropedicae SmR1]
          Length = 402

 Score = 61.6 bits (148), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 92/201 (45%), Gaps = 18/201 (8%)

Query: 45  ARALFLLSQTDPLRVYINVPQSYSNLIKQGQ-------------KVVVTQTELRGQKFD- 90
           A  L L+ Q DP  VY+NV QS ++L+K  Q             K  VT     GQ +  
Sbjct: 199 ATQLALVQQLDP--VYVNVTQSSADLLKLQQAMAAGQLKSVGDNKASVTLELENGQAYPL 256

Query: 91  -GKVARTAASIDTTTRTMQVEVSLPNPDGALMPGAFVQVALPLK-PSGALVVSTDVLLFR 148
            GK+  +  S+D  T ++ +    PNP   L+PG +V+  +       AL+V    ++  
Sbjct: 257 PGKLLFSDISVDENTGSVSLRAEFPNPKRLLLPGTYVRAKIEQAVDEQALLVPQQAVVRD 316

Query: 149 RDGAMVAAVDAGNKIRLKRVQLGRNFGQSVEVLEGINGDERLILNPSDSVAEGDEVSVAA 208
             G+ V  V+A NK+  + V+ G   G + +VL+G+   +R+I+     V  G  V    
Sbjct: 317 AGGSTVMVVNAENKVEPRPVKTGGARGNNWQVLDGLKEGDRVIVEGLQKVRPGATVKPVQ 376

Query: 209 ETAAPKDKDKDGKPATEKAKS 229
              A       G+PA ++A +
Sbjct: 377 WNPAGAPAQASGQPAKQEASA 397


>gi|300313894|ref|YP_003777986.1| RND family efflux transporter MFP
           subunit [Herbaspirillum seropedicae SmR1]
          Length = 428

 Score = 56.2 bits (134), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 81/173 (46%), Gaps = 19/173 (10%)

Query: 47  ALFLLSQTDPLRVYINVPQSYSNLI------------KQGQKVVVTQTELR-GQKFD--G 91
           AL  + Q DP  +Y++V QS  +L+            K G+     +  L  G  ++  G
Sbjct: 211 ALTTVQQIDP--IYVDVTQSTVDLLRLRRELASGQIRKSGENAAQVKIVLEDGSTYERPG 268

Query: 92  KVARTAASIDTTTRTMQVEVSLPNPDGALMPGAFVQVALPLK-PSGALVVSTDVLLFRRD 150
           K+  T  S+DT T  + +   +PNPDG L+PGA+V+  L       AL+     +   + 
Sbjct: 269 KLEFTGLSVDTGTGMITLRAVVPNPDGVLLPGAYVRAVLEEGVDDHALLAPQKAVSRDQT 328

Query: 151 GAMVAAV-DAGNKIRLKRVQLGRNFGQSVEVLEGINGDERLILNPSDSVAEGD 202
           GA  A V  A  K++ + V + R  G +  V  G+   ++LI++    V  GD
Sbjct: 329 GAATALVLGADGKVQQRLVSVARAVGNNWWVSRGLKEGDKLIVDGLQKVRTGD 381


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.129    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 506,799
Number of extensions: 18815
Number of successful extensions: 64
Number of sequences better than 1.0e-08: 6
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 6
Length of query: 229
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 147
Effective length of database: 1,231,600
Effective search space: 181045200
Effective search space used: 181045200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 129 (54.3 bits)