BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0153.p
         (323 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312565|ref|YP_003776657.1| multidrug resistance transmembr...   323   1e-89
gi|300312016|ref|YP_003776108.1| multidrug resistance A (translo...    65   7e-12

>gi|300312565|ref|YP_003776657.1| multidrug resistance transmembrane
           efflux pump protein [Herbaspirillum seropedicae SmR1]
          Length = 411

 Score =  323 bits (828), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 170/244 (69%), Positives = 194/244 (79%), Gaps = 6/244 (2%)

Query: 1   MSHSDSQAIQTIS------TADNAPGNAPGKRKKLFTIFAGVVAVVAIGYGTYWYFIGSR 54
           MSHSDSQA  T++          +   A  KRKKLF+IF GVVA+ AIGYG YWY IGSR
Sbjct: 1   MSHSDSQAAHTLAEEAKQRNEAASAAAAAQKRKKLFSIFGGVVAIAAIGYGAYWYLIGSR 60

Query: 55  YVTTDNAYTAVEISQVTPAVNGIVSEVNVVDTQYVHQGDVLVVIDSRDATLALAQAEADL 114
           YV TDNAYTA EI+ VTPA+NGIV+ V+VVDTQ V +GDVLV ID  DA LA+ QA ADL
Sbjct: 61  YVETDNAYTATEIATVTPAINGIVAAVDVVDTQAVKKGDVLVRIDDADARLAVDQAAADL 120

Query: 115 GRAERRVQSYFANDTGFVAQVQAREAEQKRSAAQLLSAQADLQRAELDLRRREALEKSGS 174
            R ER+V+ +FAND G  AQV AREAEQKR++AQLLSAQADL+RAE+DL+RREAL KSGS
Sbjct: 121 DRTERKVKGFFANDAGLAAQVLAREAEQKRASAQLLSAQADLKRAEIDLQRREALAKSGS 180

Query: 175 VSGEELTNARTTVLTMQANLKAAEAGKIQADANRNATVGAQKASTVLTANTTVDTNPEVT 234
           VSGEEL+NART +LT QANLKAAEA ++Q+ AN  AT GAQKASTVLTANTTVD NPEV 
Sbjct: 181 VSGEELSNARTALLTAQANLKAAEAAEVQSRANIKATQGAQKASTVLTANTTVDDNPEVV 240

Query: 235 LARA 238
           LARA
Sbjct: 241 LARA 244


>gi|300312016|ref|YP_003776108.1| multidrug resistance A
           (translocase) transmembrane secretion protein
           [Herbaspirillum seropedicae SmR1]
          Length = 406

 Score = 65.1 bits (157), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 87/170 (51%), Gaps = 14/170 (8%)

Query: 18  APGNAPGKRKKLFTIFAGVVAVVAIGYGTYWYFIGSRYVTTDNAYTAVEISQVTPAVNGI 77
           A  N  GKRK+   +   V+ V+A+    YW+     +  TD+AY    + Q++  V G 
Sbjct: 12  ANNNGNGKRKRQLILLTLVLLVIAVACFLYWFLHARFFEETDDAYVGGNVVQISAQVGGT 71

Query: 78  VSEVNVVDTQYVHQGDVLVVIDSRDATLALAQAEADLGRAERRVQSYFANDTGFVAQVQA 137
           V  V   DTQ V  G  LV +D+ D  LAL QA+A L +A R+ +  F N+    A V A
Sbjct: 72  VVAVKADDTQVVKAGQQLVALDAADTRLALDQAQAALAQAVRQTRQLFLNNDTLAANVAA 131

Query: 138 REAEQKRSAAQLLSAQADLQRAELDLRRREALEKSGSVSGEELTNARTTV 187
                         A ++L RA  DL+RR+A   SG+VS E++++AR  V
Sbjct: 132 --------------ADSNLARAREDLQRRQAGLSSGAVSQEDVSHARDAV 167


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.127    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 754,908
Number of extensions: 23995
Number of successful extensions: 126
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 4
Length of query: 323
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 238
Effective length of database: 1,217,395
Effective search space: 289740010
Effective search space used: 289740010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 131 (55.1 bits)