BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0143.p
         (268 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309576|ref|YP_003773668.1| prolidase [Herbaspirillum serop...   439   e-124

>gi|300309576|ref|YP_003773668.1| prolidase [Herbaspirillum
           seropedicae SmR1]
          Length = 409

 Score =  439 bits (1128), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 223/254 (87%), Positives = 231/254 (90%), Gaps = 10/254 (3%)

Query: 1   VADGVDAVRLAAREEIQKGATQIKIMASGGVASPTDPIGNTQYSEDEIRAIVAEAEAAQT 60
           VADGVDAVRLAAREE+QKGATQIKIMASGGVASPTDPIGNTQYSEDEIRAIVAEAEAAQT
Sbjct: 165 VADGVDAVRLAAREELQKGATQIKIMASGGVASPTDPIGNTQYSEDEIRAIVAEAEAAQT 224

Query: 61  YVMAHAYTGRAISRAVRCGVRTIEHGNLVDADAARVMREHGAFVVPTLVTYDSLARDGAR 120
           YVMAHAYTGRAI+RAVRCGVRTIEHGNLVDA AARVM EHGAFVVPTLVTYDSLARDGAR
Sbjct: 225 YVMAHAYTGRAIARAVRCGVRTIEHGNLVDAQAARVMHEHGAFVVPTLVTYDSLARDGAR 284

Query: 121 LGLPADSVAKIESVRQAGRDSLKIYAEHGVQMGFGSDLLGEMHQDQSQEFVIRAEILGNL 180
           LGLP DSVAKIESVRQAGRDSL+IYAEHGVQMGFGSDLLGEMHQDQSQEF+IRAEILGNL
Sbjct: 285 LGLPPDSVAKIESVRQAGRDSLRIYAEHGVQMGFGSDLLGEMHQDQSQEFIIRAEILGNL 344

Query: 181 EAIRSATSIAAAILQRDGELGAVRXAILQRDGELGAARADLIVVDGNPLDDIHLLAGQGE 240
           E IRSATSIAAAILQR+GELG VR   L          ADLIVVDGNPL DI LL GQGE
Sbjct: 345 ETIRSATSIAAAILQREGELGTVRAGAL----------ADLIVVDGNPLQDITLLTGQGE 394

Query: 241 HLSLVMQGGYVHRN 254
           HL LVMQ G++HR+
Sbjct: 395 HLCLVMQAGHIHRS 408


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 763,545
Number of extensions: 29400
Number of successful extensions: 153
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 184
Effective length of database: 1,222,130
Effective search space: 224871920
Effective search space used: 224871920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)