BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0140.p
         (162 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309578|ref|YP_003773670.1| dATP pyrophosphohydrolase [Herb...   240   3e-65

>gi|300309578|ref|YP_003773670.1| dATP pyrophosphohydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 167

 Score =  240 bits (613), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 119/161 (73%), Positives = 135/161 (83%), Gaps = 1/161 (0%)

Query: 3   RPFKIPESVLVVIYTAALDVLLIERTDKAGYWQSVTGSKDTPDEPLMLTARREVGEETGI 62
           +P+KIPESVLVVI++A   VLLIER D+ G+WQSVTGSKD+ DEPL  TARREV EETGI
Sbjct: 5   KPYKIPESVLVVIHSADQHVLLIERADQPGFWQSVTGSKDSLDEPLSETARREVEEETGI 64

Query: 63  VISDE-ISVSPTVPNRVPCDHLSDWKLSNDYEIYPVWRHRYAPGVTRNIEHVFGLLVPQG 121
           V++D  +       NRVP  HL DW+LSN Y+IYPVWRHRYAPGVTRN EHVFGLLVP+ 
Sbjct: 65  VVADAGVDSVHGESNRVPRAHLRDWQLSNIYDIYPVWRHRYAPGVTRNTEHVFGLLVPRD 124

Query: 122 IPVTLAPREHTRYQWLPYRAAADQCFSPSNAEAILQLPRYI 162
           IPVTLAPREHTR+ WLPYR AAD+CFSPSNAEAILQLPRY+
Sbjct: 125 IPVTLAPREHTRHVWLPYREAADRCFSPSNAEAILQLPRYL 165


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.137    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 541,907
Number of extensions: 21469
Number of successful extensions: 51
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 1
Length of query: 162
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 84
Effective length of database: 1,250,540
Effective search space: 105045360
Effective search space used: 105045360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)