BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0138.p
         (387 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309580|ref|YP_003773672.1| phosphatidylserine/phosphatidyl...   575   e-165
gi|300310445|ref|YP_003774537.1| phospholipase D family protein ...   141   8e-35

>gi|300309580|ref|YP_003773672.1|
           phosphatidylserine/phosphatidylglycerophosphate/
           cardiolipin synthase [Herbaspirillum seropedicae SmR1]
          Length = 387

 Score =  575 bits (1482), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 278/387 (71%), Positives = 318/387 (82%)

Query: 1   MRVISYSGDNHVELLRCGAEFFPALIAAIDEARVEIYLETYIFSIDDTGILVRDALVRAA 60
           MR ++++  N + LL  GA F+PALI+AID ARVEIYLETYIFS+DDTG+LV +AL RAA
Sbjct: 1   MRHLTFTDGNQIALLHSGAGFYPALISAIDAARVEIYLETYIFSLDDTGVLVCEALQRAA 60

Query: 61  QRGVVVSVITDWIGTGRVESKQLKATFTAAGVQHRSFNPWFRRGVARSHRKLCVVDRKCA 120
            RGVVV VI DW+GTGR  + +L    +AAGVQHRSFNPWFRRGVARSHRKLCVVDR+ A
Sbjct: 61  GRGVVVYVINDWLGTGRENTNKLHLALSAAGVQHRSFNPWFRRGVARSHRKLCVVDRQVA 120

Query: 121 FAGGLNINDDFFSDDARRVPLPAPRWDFAVRISGPLVEAIHREMLDQWIRIGKMKLRARW 180
           F GGLNINDD  SD     PLPAPRWDFAV I GPLV+ I+RE+  QW+R+G MKL+ARW
Sbjct: 121 FVGGLNINDDMVSDRDHMTPLPAPRWDFAVSILGPLVQEIYREVQAQWLRVGHMKLKARW 180

Query: 181 DRFKMGRYTRHDTEPGQALAGLVVRDNLRNRRTIQRAYLQALGRARETAFLTNPYFAPGR 240
             FK  R+        Q  A LVVRDN RNRRTIQRAYLQALGRARE+AFL NPYFAPGR
Sbjct: 181 RNFKRLRHGHSGPVHDQTQAALVVRDNFRNRRTIQRAYLQALGRARESAFLANPYFAPGR 240

Query: 241 KLRRALEEAALRGVRVTLLLGVGQFYLQDAVAHSFYPKLLKAGVRIVEYTKTQLHAKVAV 300
           K+RRALEEAA+RGV+VTLLLGVGQF +QDAVAHSFYPKLL+AGVRI+EYT+T+LHAKVAV
Sbjct: 241 KMRRALEEAAMRGVKVTLLLGVGQFMMQDAVAHSFYPKLLRAGVRIIEYTRTELHAKVAV 300

Query: 301 IDDEWATVGSSNYDGLSLFVNQEANVVVSDVAFAATLRTEIEIGVSEGRLVQLQDFLHSP 360
           +DD+WATVGSSNYDGLSLFVNQEANVVV D AFA  LR EIE G ++GR+V L DF+H P
Sbjct: 301 VDDKWATVGSSNYDGLSLFVNQEANVVVQDPAFAGFLRQEIEAGATQGRVVHLADFMHVP 360

Query: 361 WYKRLWYGTAFLMYRGIIRIITLGQDA 387
           WYKR  YG AFL+YR +I IITLG+DA
Sbjct: 361 WYKRAAYGAAFLLYRTVIHIITLGKDA 387


>gi|300310445|ref|YP_003774537.1| phospholipase D family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 472

 Score =  141 bits (356), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 111/378 (29%), Positives = 168/378 (44%), Gaps = 35/378 (9%)

Query: 10  NHVELLRCGAEFFPALIAAIDEARVEIYLETYIFSIDDTGILVRDALVRAAQRGVVVSVI 69
           N V LL  G   + ++  AI  AR  I +ETYI   D+ G    D L+    +GV V+++
Sbjct: 96  NKVTLLIDGPATYASMQQAIQAARYHINMETYIMEDDEVGRQFADLLIAMQNKGVQVNLM 155

Query: 70  TDWIGTGRVESKQLKATFTAAGVQHRSFNPWFRRGV-------ARSHRKLCVVDRKCAFA 122
            D +G      +        AG+Q   +NP     +        R HRKL VVD K AF 
Sbjct: 156 YDSVGALNT-PRTFFQPMIDAGIQVLEYNPLNPTQLRKDWEVNQRDHRKLLVVDGKTAFV 214

Query: 123 GGLNI-------------NDDFFSDDARRVPLPAPRW-DFAVRISGPLVEAIHREMLDQW 168
           GG+NI                  + +  ++P     W D  VRI GP+     +  +D W
Sbjct: 215 GGINISSVYSSGSFSTRKKKPRVNAEGEQIP-----WRDTQVRIDGPVALEFQKLFVDTW 269

Query: 169 IRIGKMKLRARWDRFKMGRYTRHDTEPGQALAGLVVRDNLRNRRTIQRAYLQALGRARET 228
               K +  A  D     RY       G  +   +          I   ++ A+  A + 
Sbjct: 270 ---NKQRGPALGDH----RYFPTVAPAGNEIVRAIGSSPDDPYSVIYATFISAIQHAEKA 322

Query: 229 AFLTNPYFAPGRKLRRALEEAALRGVRVTLLLGV-GQFYLQDAVAHSFYPKLLKAGVRIV 287
            +LTN YF P  +LR +L++AA RGV V L+L       L    + SFY +LL+AG+RI 
Sbjct: 323 IYLTNAYFVPDPQLRDSLKDAARRGVDVRLILPSHSDSSLVLYASRSFYQELLEAGIRIY 382

Query: 288 EYTKTQLHAKVAVIDDEWATVGSSNYDGLSLFVNQEANVVVSDVAFAATLRTEIEIGVSE 347
           E     LH+K A+ID  W+T+GS+N D  S   NQE N V+    F   +++  +  +  
Sbjct: 383 ERQDALLHSKTALIDGVWSTIGSTNLDWRSFVYNQEINAVILSPQFGVQMKSMFDRDLGA 442

Query: 348 GRLVQLQDFLHSPWYKRL 365
            + +  + +   P  +R+
Sbjct: 443 SKEITKEQWEQRPISERM 460


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.140    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,142,786
Number of extensions: 45079
Number of successful extensions: 159
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 2
Length of query: 387
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 300
Effective length of database: 1,207,925
Effective search space: 362377500
Effective search space used: 362377500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)