BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0136.p (282 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309581|ref|YP_003773673.1| acetyl-CoA acetyltransferase [H... 466 e-132 gi|300310259|ref|YP_003774351.1| acetyl-CoA acetyltransferase [H... 191 5e-50 gi|300313287|ref|YP_003777379.1| beta-ketoadipyl-CoA thiolase [H... 143 2e-35 gi|300313421|ref|YP_003777513.1| 3-oxoadipyl-CoA thiolase [Herba... 138 6e-34 gi|300309598|ref|YP_003773690.1| acetyl-CoA acyltransferase [Her... 131 6e-32 >gi|300309581|ref|YP_003773673.1| acetyl-CoA acetyltransferase [Herbaspirillum seropedicae SmR1] Length = 391 Score = 466 bits (1198), Expect = e-132, Method: Compositional matrix adjust. Identities = 228/247 (92%), Positives = 241/247 (97%) Query: 1 MDDVVIVAAQRTAVGKFGGSLSKIAASDLGAQVIKALLAKTGIKPESISEVILGQVLTAG 60 MDDVVIVAAQRTA+GKFGG+LSKIAA+DLGAQVIKALLAKTGIKPE+ISEVILGQVLTAG Sbjct: 1 MDDVVIVAAQRTAIGKFGGALSKIAAADLGAQVIKALLAKTGIKPEAISEVILGQVLTAG 60 Query: 61 VGQNPARQAVIRSGLPDMVPAFVVGKVCGSGLKAVQLAAQAIKCGDAQIVIAGGQENMSA 120 +GQNPARQ+VI+SGLPDMVPAFVVGKVCGSGLKAVQLAAQAI+CGDAQIVIAGGQENMSA Sbjct: 61 LGQNPARQSVIKSGLPDMVPAFVVGKVCGSGLKAVQLAAQAIRCGDAQIVIAGGQENMSA 120 Query: 121 SPHVLNNSRDGFRMGDAKLTDTMIVDGLWDVYNQYHMGITAENVAKKYDISRKEQDEFAA 180 SPHVLNNSRDGFRMGDAKLTDTMIVDGLWDVYNQYHMGITAENVAKK++ISR+EQD FAA Sbjct: 121 SPHVLNNSRDGFRMGDAKLTDTMIVDGLWDVYNQYHMGITAENVAKKFEISREEQDAFAA 180 Query: 181 ASQNKAEAAQKAGKFKDEIVPIEIKNKKETIVFDTDEFVKPGVTAEALGALRPAFDKEGT 240 ASQNKAEAAQKAGKFKDEIVPIEIK KKET+VFDTDEFVK GVTAE+L LRPAFDK GT Sbjct: 181 ASQNKAEAAQKAGKFKDEIVPIEIKGKKETVVFDTDEFVKHGVTAESLATLRPAFDKAGT 240 Query: 241 VTAGNAS 247 VTAGNAS Sbjct: 241 VTAGNAS 247 >gi|300310259|ref|YP_003774351.1| acetyl-CoA acetyltransferase [Herbaspirillum seropedicae SmR1] Length = 400 Score = 191 bits (485), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 110/254 (43%), Positives = 155/254 (61%), Gaps = 10/254 (3%) Query: 2 DDVVIVAAQRTAVGKFGGSLSKIAASDLGAQVIKALLAKTGIKPESISE---VILGQVLT 58 D VVIV+A RTA+G F G+L+ + A LGA I A L + + I++ V +G VL Sbjct: 4 DPVVIVSAARTAMGSFQGALADLPAPHLGAVAISAALQRAQLSAAQIAQIEQVWMGCVLQ 63 Query: 59 AGVGQNPARQAVIRSGLPDMVPAFVVGKVCGSGLKAVQLAAQAIKCGDAQIVIAGGQENM 118 AG+GQ PARQA +R+GLP V + KVCGS ++AV L +I G A +V+AGG E+M Sbjct: 64 AGLGQAPARQAALRAGLPQTVACATLNKVCGSAMQAVMLGHDSILAGSASMVVAGGMESM 123 Query: 119 SASPHVLNNSRDGFRMGDAKLTDTMIVDGLWDVY-NQYH---MGITAENVAKKYDISRKE 174 S +P++L +R G+R+G +L D M +DGL D Y +QY MG AE+ A ++ +R + Sbjct: 124 SNAPYLLPKARRGYRLGHDRLLDHMFLDGLEDAYSDQYRGRLMGTFAEDCASEFGFTRAQ 183 Query: 175 QDEFAAASQNKAEAAQKAGKFKDEIVPIEIKNKKETIVFDTDEFVKP-GVTAEALGALRP 233 QD FA S +A A G F E+VP+++ KK ++V DE P V E + L+P Sbjct: 184 QDAFAVQSTLRARQAISGGGFDWEVVPVDVAGKKGSVVISQDE--GPMAVNLERIATLKP 241 Query: 234 AFDKEGTVTAGNAS 247 AF +GTVTA N+S Sbjct: 242 AFSVDGTVTAANSS 255 >gi|300313287|ref|YP_003777379.1| beta-ketoadipyl-CoA thiolase [Herbaspirillum seropedicae SmR1] Length = 400 Score = 143 bits (361), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 104/262 (39%), Positives = 151/262 (57%), Gaps = 10/262 (3%) Query: 1 MDDVVIVAAQRTAVGKFGGSLSKIAASDLGAQVIKALLAKT-GIKPESISEVILGQVLTA 59 M DV I A RT +G++GG+L + A DLGA ++AL+ + + +++ +VI G A Sbjct: 1 MKDVFICDAIRTPIGRYGGALKDVRADDLGAVPLRALMERNPQVDWKAVDDVIYGCANQA 60 Query: 60 GV-GQNPARQAVIRSGLPDMVPAFVVGKVCGSGLKAVQLAAQAIKCGDAQIVIAGGQENM 118 G +N AR +++ +GLP VP + ++CGSG+ A+ AA+AIK G+ Q++IAGG E+M Sbjct: 61 GEDNRNVARMSLLLAGLPQEVPGSTINRLCGSGMDALGTAARAIKSGETQLMIAGGVESM 120 Query: 119 SASPHVLNNSRDGFRMGDAKLTDTMI----VDGLW-DVYNQYHMGITAENVAKKYDISRK 173 + +P V+ + F A + DT I V+ L Y M TAENVA + +SR Sbjct: 121 TRAPFVMGKADSAFSR-QAAIQDTTIGWRFVNALMKQKYGVDAMPETAENVAVDFKVSRA 179 Query: 174 EQDEFAAASQNKAEAAQKAGKFKDEIVPIEIKNKK-ETIVFDTDEFVKPGVTAEALGALR 232 +QD+FA SQ KA AAQ G EIVP+ I KK + I DE + + EAL L+ Sbjct: 180 DQDQFAVRSQAKAAAAQANGTLAQEIVPVVIPQKKGDPITVTQDEHPR-ATSMEALARLK 238 Query: 233 PAFDKEGTVTAGNASPRLNWAC 254 +G+VTAGNAS + AC Sbjct: 239 GVVKPDGSVTAGNASGVNDGAC 260 >gi|300313421|ref|YP_003777513.1| 3-oxoadipyl-CoA thiolase [Herbaspirillum seropedicae SmR1] Length = 401 Score = 138 bits (347), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 103/260 (39%), Positives = 146/260 (56%), Gaps = 9/260 (3%) Query: 3 DVVIVAAQRTAVGKFGGSLSKIAASDLGAQVIKALLAKT-GIKPESISEVILGQVLTAGV 61 + +I A RT G++GG+L + A DL A I++L+ + G+ + +++ G AG Sbjct: 2 EALICDAIRTPFGRYGGALGAVRADDLAAAPIRSLMERNPGVDWSRVEDILYGCANQAGE 61 Query: 62 -GQNPARQAVIRSGLPDMVPAFVVGKVCGSGLKAVQLAAQAIKCGDAQIVIAGGQENMSA 120 +N AR A + +GLP VP V ++CGS L AV +AA+AIK G+ Q++IAGG E+M+ Sbjct: 62 DNRNVARMAGLLAGLPIAVPGSTVNRLCGSSLDAVGMAARAIKSGEVQLMIAGGVESMTR 121 Query: 121 SPHVLNNSRDGFRMGDAKLTDTMI----VDGLWDV-YNQYHMGITAENVAKKYDISRKEQ 175 +P V+ + F A + DT I V+ L Y M TAENVA + I+R +Q Sbjct: 122 APFVMGKAESAFAR-SAAIFDTTIGWRFVNPLMKAQYGIDSMPETAENVATDFQINRADQ 180 Query: 176 DEFAAASQNKAEAAQKAGKFKDEIVPIEIKNKK-ETIVFDTDEFVKPGVTAEALGALRPA 234 D FA SQ + AAQ AG F EI P+ I KK + +V TDE +P T L L+ Sbjct: 181 DAFALRSQQRWAAAQAAGFFAGEIAPLTIPQKKGDPLVVTTDEHPRPDTTLATLAKLKGV 240 Query: 235 FDKEGTVTAGNASPRLNWAC 254 +GTVTAGNAS + AC Sbjct: 241 VRPDGTVTAGNASGVNDGAC 260 >gi|300309598|ref|YP_003773690.1| acetyl-CoA acyltransferase [Herbaspirillum seropedicae SmR1] Length = 398 Score = 131 bits (330), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 92/262 (35%), Positives = 139/262 (53%), Gaps = 28/262 (10%) Query: 1 MDDVVIVAAQRTAVGKFG-GSLSKIAASDLGAQVIKALLAKT-GIKPESISEVILGQVLT 58 + D IVAA RT +GK G DL + I++ +A+ G+ P+ I + I+G Sbjct: 5 LQDAYIVAATRTPIGKAPRGMFKNTRPDDLLVRAIQSAVAQVPGLDPKLIEDAIVGCSFP 64 Query: 59 AGV-GQNPARQAVIRSGLPDMVPAFVVGKVCGSGLKAVQLAAQAIKCGDAQIVIAGGQEN 117 G G N AR AV+ +GLP+ + + + C SG+ A+ +AA I+ G+A ++IA G E+ Sbjct: 65 EGAQGLNMARNAVLLAGLPNTIGGVTINRYCASGITAIAMAADRIRVGEADVMIAAGAES 124 Query: 118 MSASPHVLNNSRDGFRMGDAKLTDTMIVDGLWD--VYNQYHMGITAENVAKKYDISRKEQ 175 MS P + GF ++ ++ D V Y MG+TAE VA+++ +SR+ Q Sbjct: 125 MSMVPMM------GFH-------PSININAFKDENVGMAYGMGLTAEKVAQQWKVSREAQ 171 Query: 176 DEFAAASQNKAEAAQKAGKFKDEIVPIEIKNK----------KETIVFDTDEFVKPGVTA 225 DEF+ AS KA AAQ+AG+F DE+ EI + +T DE + Sbjct: 172 DEFSLASHQKAIAAQEAGEFADEMTSFEIVERFPNLATGEIDVKTRTVSLDEGPRADSNL 231 Query: 226 EALGALRPAFDKEGTVTAGNAS 247 AL L+P F +G+VTAGN+S Sbjct: 232 AALAKLKPVFAAKGSVTAGNSS 253 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.132 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 779,203 Number of extensions: 30492 Number of successful extensions: 132 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 120 Number of HSP's successfully gapped: 6 Length of query: 282 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 198 Effective length of database: 1,222,130 Effective search space: 241981740 Effective search space used: 241981740 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)