BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0135.p
         (99 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309581|ref|YP_003773673.1| acetyl-CoA acetyltransferase [H...   203   2e-54
gi|300313295|ref|YP_003777387.1| acetyl-CoA acetyltransferase [H...    99   5e-23
gi|300313421|ref|YP_003777513.1| 3-oxoadipyl-CoA thiolase [Herba...    95   1e-21
gi|300310259|ref|YP_003774351.1| acetyl-CoA acetyltransferase [H...    94   2e-21
gi|300313287|ref|YP_003777379.1| beta-ketoadipyl-CoA thiolase [H...    93   3e-21

>gi|300309581|ref|YP_003773673.1| acetyl-CoA acetyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 391

 Score =  203 bits (516), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 97/99 (97%), Positives = 99/99 (100%)

Query: 1   VPASQLTLKKAGWTPQDLDLMEINEAFAAQAIAVNKQMGWDTSKINVNGGAIAIGHPIGA 60
           VPASQLTLKKAGWTPQDLDLMEINEAFAAQAIAVNKQMGWDTSKINVNGGAIA+GHPIGA
Sbjct: 293 VPASQLTLKKAGWTPQDLDLMEINEAFAAQAIAVNKQMGWDTSKINVNGGAIALGHPIGA 352

Query: 61  SGCRVLVTLLHEMVRRDAKRGLASLCIGGGMGVALAVER 99
           SGCRVLVTLLHEMVRRDAK+GLASLCIGGGMGVALAVER
Sbjct: 353 SGCRVLVTLLHEMVRRDAKKGLASLCIGGGMGVALAVER 391


>gi|300313295|ref|YP_003777387.1| acetyl-CoA acetyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 417

 Score = 99.4 bits (246), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 49/98 (50%), Positives = 68/98 (69%)

Query: 1   VPASQLTLKKAGWTPQDLDLMEINEAFAAQAIAVNKQMGWDTSKINVNGGAIAIGHPIGA 60
           VPA +  L++ G T  D+   EINEA  AQ +AV +++G D  ++NVNGGAIA+GHP+ A
Sbjct: 314 VPAIRTLLERNGLTVADIGCFEINEAQGAQIVAVERELGIDRERLNVNGGAIALGHPLAA 373

Query: 61  SGCRVLVTLLHEMVRRDAKRGLASLCIGGGMGVALAVE 98
           +G R+ +T   EM RR A+  +AS CIGGG G+AL +E
Sbjct: 374 TGVRLSITAAREMNRRGARYCVASACIGGGQGIALLLE 411


>gi|300313421|ref|YP_003777513.1| 3-oxoadipyl-CoA thiolase
           [Herbaspirillum seropedicae SmR1]
          Length = 401

 Score = 94.7 bits (234), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 46/100 (46%), Positives = 69/100 (69%), Gaps = 2/100 (2%)

Query: 2   PASQLTLKKAGWTPQDLDLMEINEAFAAQAIAVNKQMGW--DTSKINVNGGAIAIGHPIG 59
           PA +  L + G T   +D++E+NEAFAAQ +AV + +G   D + +N NGGAIAIGHP+G
Sbjct: 300 PAVRKVLAQVGLTLAQMDVIELNEAFAAQGLAVMRDLGLPDDAAHVNPNGGAIAIGHPLG 359

Query: 60  ASGCRVLVTLLHEMVRRDAKRGLASLCIGGGMGVALAVER 99
           ASG R++ T ++++ R   +  L ++CIG G G+AL +ER
Sbjct: 360 ASGARLVTTAINQLERSGGRYALCTMCIGVGQGIALVIER 399


>gi|300310259|ref|YP_003774351.1| acetyl-CoA acetyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 400

 Score = 94.4 bits (233), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 47/91 (51%), Positives = 61/91 (67%)

Query: 8   LKKAGWTPQDLDLMEINEAFAAQAIAVNKQMGWDTSKINVNGGAIAIGHPIGASGCRVLV 67
             K G      DL EINEAFA   +A ++++  D  KINV+GGA A+GHPIGASG R++V
Sbjct: 308 FAKTGLDAASTDLFEINEAFAVVPMAASRELDIDMEKINVHGGACALGHPIGASGARIIV 367

Query: 68  TLLHEMVRRDAKRGLASLCIGGGMGVALAVE 98
           +LL  +  R  K G+ASLCIGGG   A+A+E
Sbjct: 368 SLLGALKARGLKTGIASLCIGGGEATAIALE 398


>gi|300313287|ref|YP_003777379.1| beta-ketoadipyl-CoA thiolase
           [Herbaspirillum seropedicae SmR1]
          Length = 400

 Score = 93.2 bits (230), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 70/100 (70%), Gaps = 2/100 (2%)

Query: 2   PASQLTLKKAGWTPQDLDLMEINEAFAAQAIAVNKQMGW--DTSKINVNGGAIAIGHPIG 59
           PAS+  L + G T   +D++E+NEAFA+Q +AV +++G   D +++N NGGAIA+GHP+G
Sbjct: 300 PASKKVLAQLGMTIDQMDVIELNEAFASQGLAVLRELGVADDDARVNPNGGAIALGHPLG 359

Query: 60  ASGCRVLVTLLHEMVRRDAKRGLASLCIGGGMGVALAVER 99
            SG R++ T  +++ R   +  L ++CIG G G+A+ +ER
Sbjct: 360 MSGARLVTTATYQLERTGGRYALCTMCIGVGQGIAMVIER 399


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 239,311
Number of extensions: 5514
Number of successful extensions: 31
Number of sequences better than 1.0e-08: 6
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 6
Length of query: 99
Length of database: 1,619,870
Length adjustment: 68
Effective length of query: 31
Effective length of database: 1,297,890
Effective search space: 40234590
Effective search space used: 40234590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 123 (52.0 bits)