BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0124.p
         (230 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311883|ref|YP_003775975.1| cyclic nucleotide-binding prote...   207   9e-55
gi|300313985|ref|YP_003778077.1| cyclic nucleotide-binding prote...   192   2e-50

>gi|300311883|ref|YP_003775975.1| cyclic nucleotide-binding protein
           [Herbaspirillum seropedicae SmR1]
          Length = 225

 Score =  207 bits (526), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 97/216 (44%), Positives = 141/216 (65%)

Query: 10  FLNKSRWPAELTEDQMERLRQNIFEKSFASGTIIYPRGTPADHWFGLIEGMIKVDTVSQD 69
            L KS W   LTE+Q+ R+   +  +   +G  +  +G    HW G+ EG++K+ +VS +
Sbjct: 8   MLAKSIWAQALTEEQLARVETEVVSRKIPAGGYVCRKGDAVTHWIGVHEGLLKMSSVSPE 67

Query: 70  GRSTTFAGVPGGAWFGEGAVLKNEPRPYSIVAIRDSKLAFVPKQTFEWLLSQSTSFSRFV 129
           G++ +FAG+  G W GEG++LK+EPR Y +VA+R+S+L ++PK T+ WLL  S  F+RF+
Sbjct: 68  GKTVSFAGMANGGWLGEGSLLKDEPRKYDVVALRESELLYMPKATYIWLLDNSIPFNRFL 127

Query: 130 IDQLNWRCGYYVALIENRRLREASARVAFCLSELFNPQLYPSTEQALPLSQEEIGRLSGL 189
           + QLN R   +++L+E  R+ E  ARVA CL+ LFNP L P     L +SQEE+G LSG 
Sbjct: 128 VTQLNERLALFISLVEYDRMLEPDARVARCLAALFNPYLNPGIGLNLQISQEEVGNLSGT 187

Query: 190 SRQNTNRALRELADMKLLSVEYGSVVILDLSRLREF 225
           SRQ  N+AL+ L    LL V+YGS+ I DL  LR+F
Sbjct: 188 SRQRANQALQVLEKAGLLKVDYGSITINDLEGLRQF 223


>gi|300313985|ref|YP_003778077.1| cyclic nucleotide-binding protein
           [Herbaspirillum seropedicae SmR1]
          Length = 224

 Score =  192 bits (488), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 93/217 (42%), Positives = 136/217 (62%)

Query: 10  FLNKSRWPAELTEDQMERLRQNIFEKSFASGTIIYPRGTPADHWFGLIEGMIKVDTVSQD 69
            L +  W A L  +             +A+   +  RG  + +W G+ EG+IK+   + D
Sbjct: 4   LLQQYDWFAALASEHRALAAATTQRVRYAADAFVARRGELSQYWIGVHEGLIKLAVYNID 63

Query: 70  GRSTTFAGVPGGAWFGEGAVLKNEPRPYSIVAIRDSKLAFVPKQTFEWLLSQSTSFSRFV 129
           GRS+T +GVP G W GEG+V+K EPR Y ++AIR S++  VP  TF  L+++S  F+ FV
Sbjct: 64  GRSSTLSGVPEGGWCGEGSVIKREPRRYDVIAIRASQILLVPADTFHCLMAESLPFNAFV 123

Query: 130 IDQLNWRCGYYVALIENRRLREASARVAFCLSELFNPQLYPSTEQALPLSQEEIGRLSGL 189
           I QLN R G ++A ++N RL +  ARVA  +++LF+P LYP T + L LSQEEIG L+GL
Sbjct: 124 IGQLNERMGQFIATVQNERLLDVDARVAQAIAQLFHPMLYPRTSKVLELSQEEIGLLTGL 183

Query: 190 SRQNTNRALRELADMKLLSVEYGSVVILDLSRLREFA 226
           SRQ  N+A+R LA++ L+ + Y S+ ++DL  LR F 
Sbjct: 184 SRQRVNQAMRRLAELGLVEISYQSIRVVDLDGLRAFG 220


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 704,428
Number of extensions: 28519
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 3
Length of query: 230
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 148
Effective length of database: 1,231,600
Effective search space: 182276800
Effective search space used: 182276800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)