BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0120.p
         (102 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313289|ref|YP_003777381.1| 3-oxoadipate CoA-transferase su...   181   1e-47
gi|300313920|ref|YP_003778012.1| acyl CoA:acetate/3-ketoacid CoA...    95   1e-21

>gi|300313289|ref|YP_003777381.1| 3-oxoadipate CoA-transferase
           subunit A [Herbaspirillum seropedicae SmR1]
          Length = 224

 Score =  181 bits (458), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 85/91 (93%), Positives = 88/91 (96%)

Query: 1   MLAEGKETRLIDGRHYVLESPIHADFALIKALRGDRWGNLVYRKTARNFGPIMAMAAKCT 60
           MLAEGKETR I+GRHYVLESPIHADFALIKALRGDRWGNLVYRKTARNFGPIMAMAAKCT
Sbjct: 129 MLAEGKETREINGRHYVLESPIHADFALIKALRGDRWGNLVYRKTARNFGPIMAMAAKCT 188

Query: 61  IAQVSEVVALGELDPEVIVTPGIFVQRVVQT 91
           IAQVSEVV LG+LDPE IVTPGIFVQR+VQT
Sbjct: 189 IAQVSEVVELGQLDPENIVTPGIFVQRIVQT 219


>gi|300313920|ref|YP_003778012.1| acyl CoA:acetate/3-ketoacid CoA
           transferase subunit alpha [Herbaspirillum seropedicae
           SmR1]
          Length = 231

 Score = 94.7 bits (234), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 49/89 (55%), Positives = 66/89 (74%)

Query: 1   MLAEGKETRLIDGRHYVLESPIHADFALIKALRGDRWGNLVYRKTARNFGPIMAMAAKCT 60
           ++AEGKE R  DG  YV+E  + AD +L+KA + D+ GNLV+ KTARNF P +AMA K T
Sbjct: 127 LVAEGKEVREFDGERYVMERSLVADVSLVKAHKADKAGNLVFNKTARNFNPNVAMAGKVT 186

Query: 61  IAQVSEVVALGELDPEVIVTPGIFVQRVV 89
           + +V E+V +G+LDP+ I TPGIFV R+V
Sbjct: 187 VVEVEELVEVGQLDPDQIHTPGIFVHRIV 215


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 287,462
Number of extensions: 9099
Number of successful extensions: 22
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 2
Length of query: 102
Length of database: 1,619,870
Length adjustment: 71
Effective length of query: 31
Effective length of database: 1,283,685
Effective search space: 39794235
Effective search space used: 39794235
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 123 (52.0 bits)