BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0119.p (283 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313287|ref|YP_003777379.1| beta-ketoadipyl-CoA thiolase [H... 293 7e-81 gi|300313421|ref|YP_003777513.1| 3-oxoadipyl-CoA thiolase [Herba... 254 7e-69 gi|300309581|ref|YP_003773673.1| acetyl-CoA acetyltransferase [H... 118 6e-28 gi|300310259|ref|YP_003774351.1| acetyl-CoA acetyltransferase [H... 117 1e-27 gi|300313288|ref|YP_003777380.1| 3-oxoadipate CoA-transferase su... 112 3e-26 >gi|300313287|ref|YP_003777379.1| beta-ketoadipyl-CoA thiolase [Herbaspirillum seropedicae SmR1] Length = 400 Score = 293 bits (751), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 150/176 (85%), Positives = 163/176 (92%) Query: 63 PRDVPGATINRLCGSGMDAIGIAARAIKSGEAQLMIAGGVESMTRAPFVMGKADSAFSRN 122 P++VPG+TINRLCGSGMDA+G AARAIKSGE QLMIAGGVESMTRAPFVMGKADSAFSR Sbjct: 78 PQEVPGSTINRLCGSGMDALGTAARAIKSGETQLMIAGGVESMTRAPFVMGKADSAFSRQ 137 Query: 123 AAIYDTTIGWRFINPLMKAQYGADAMPETGENVADDYKISRADQDKFAVRSQAKAAAAQQ 182 AAI DTTIGWRF+N LMK +YG DAMPET ENVA D+K+SRADQD+FAVRSQAKAAAAQ Sbjct: 138 AAIQDTTIGWRFVNALMKQKYGVDAMPETAENVAVDFKVSRADQDQFAVRSQAKAAAAQA 197 Query: 183 NGILAQEIVPVVIPQKKGEAITVTQDEHPRATSMEALAKLKPIVRPDGSVTAGNAS 238 NG LAQEIVPVVIPQKKG+ ITVTQDEHPRATSMEALA+LK +V+PDGSVTAGNAS Sbjct: 198 NGTLAQEIVPVVIPQKKGDPITVTQDEHPRATSMEALARLKGVVKPDGSVTAGNAS 253 >gi|300313421|ref|YP_003777513.1| 3-oxoadipyl-CoA thiolase [Herbaspirillum seropedicae SmR1] Length = 401 Score = 254 bits (648), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 129/177 (72%), Positives = 152/177 (85%), Gaps = 1/177 (0%) Query: 63 PRDVPGATINRLCGSGMDAIGIAARAIKSGEAQLMIAGGVESMTRAPFVMGKADSAFSRN 122 P VPG+T+NRLCGS +DA+G+AARAIKSGE QLMIAGGVESMTRAPFVMGKA+SAF+R+ Sbjct: 77 PIAVPGSTVNRLCGSSLDAVGMAARAIKSGEVQLMIAGGVESMTRAPFVMGKAESAFARS 136 Query: 123 AAIYDTTIGWRFINPLMKAQYGADAMPETGENVADDYKISRADQDKFAVRSQAKAAAAQQ 182 AAI+DTTIGWRF+NPLMKAQYG D+MPET ENVA D++I+RADQD FA+RSQ + AAAQ Sbjct: 137 AAIFDTTIGWRFVNPLMKAQYGIDSMPETAENVATDFQINRADQDAFALRSQQRWAAAQA 196 Query: 183 NGILAQEIVPVVIPQKKGEAITVTQDEHPR-ATSMEALAKLKPIVRPDGSVTAGNAS 238 G A EI P+ IPQKKG+ + VT DEHPR T++ LAKLK +VRPDG+VTAGNAS Sbjct: 197 AGFFAGEIAPLTIPQKKGDPLVVTTDEHPRPDTTLATLAKLKGVVRPDGTVTAGNAS 253 >gi|300309581|ref|YP_003773673.1| acetyl-CoA acetyltransferase [Herbaspirillum seropedicae SmR1] Length = 391 Score = 118 bits (295), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 76/181 (41%), Positives = 105/181 (58%), Gaps = 14/181 (7%) Query: 63 PRDVPGATINRLCGSGMDAIGIAARAIKSGEAQLMIAGGVESMTRAPFVMGKADSAFSR- 121 P VP + ++CGSG+ A+ +AA+AI+ G+AQ++IAGG E+M+ +P V+ + F Sbjct: 76 PDMVPAFVVGKVCGSGLKAVQLAAQAIRCGDAQIVIAGGQENMSASPHVLNNSRDGFRMG 135 Query: 122 NAAIYDTTIG---WRFINPLMKAQYGADAMPETGENVADDYKISRADQDKFAVRSQAKAA 178 +A + DT I W N QY M T ENVA ++ISR +QD FA SQ KA Sbjct: 136 DAKLTDTMIVDGLWDVYN-----QY---HMGITAENVAKKFEISREEQDAFAAASQNKAE 187 Query: 179 AAQQNGILAQEIVPVVIPQKKGEAITVTQDEHPR-ATSMEALAKLKPIVRPDGSVTAGNA 237 AAQ+ G EIVP+ I KK E + DE + + E+LA L+P G+VTAGNA Sbjct: 188 AAQKAGKFKDEIVPIEIKGKK-ETVVFDTDEFVKHGVTAESLATLRPAFDKAGTVTAGNA 246 Query: 238 S 238 S Sbjct: 247 S 247 >gi|300310259|ref|YP_003774351.1| acetyl-CoA acetyltransferase [Herbaspirillum seropedicae SmR1] Length = 400 Score = 117 bits (293), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 71/197 (36%), Positives = 111/197 (56%), Gaps = 13/197 (6%) Query: 53 GMGPAPX------GPPPRDVPGATINRLCGSGMDAIGIAARAIKSGEAQLMIAGGVESMT 106 G+G AP P+ V AT+N++CGS M A+ + +I +G A +++AGG+ESM+ Sbjct: 65 GLGQAPARQAALRAGLPQTVACATLNKVCGSAMQAVMLGHDSILAGSASMVVAGGMESMS 124 Query: 107 RAPFVMGKADSAFSRNAAIYDTTIGWRFINPLMKA---QYGADAMPETGENVADDYKISR 163 AP+++ KA + +D + F++ L A QY M E+ A ++ +R Sbjct: 125 NAPYLLPKARRGYRLG---HDRLLDHMFLDGLEDAYSDQYRGRLMGTFAEDCASEFGFTR 181 Query: 164 ADQDKFAVRSQAKAAAAQQNGILAQEIVPVVIPQKKGEAITVTQDEHPRATSMEALAKLK 223 A QD FAV+S +A A G E+VPV + KKG ++ ++QDE P A ++E +A LK Sbjct: 182 AQQDAFAVQSTLRARQAISGGGFDWEVVPVDVAGKKG-SVVISQDEGPMAVNLERIATLK 240 Query: 224 PIVRPDGSVTAGNASIV 240 P DG+VTA N+S + Sbjct: 241 PAFSVDGTVTAANSSSI 257 >gi|300313288|ref|YP_003777380.1| 3-oxoadipate CoA-transferase subunit B [Herbaspirillum seropedicae SmR1] Length = 213 Score = 112 bits (281), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 51/58 (87%), Positives = 56/58 (96%) Query: 1 MSRYTREQMAARVARDIPEGAYVNLGIGLPTKVANYLPADKEIFLQSENGLLGMGPAP 58 M R+TRE++AARVA+DIPEGAYVNLGIGLPTKVANYLPADKEIFL SENG+LGMGPAP Sbjct: 1 MKRFTREEIAARVAQDIPEGAYVNLGIGLPTKVANYLPADKEIFLHSENGVLGMGPAP 58 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.129 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 707,729 Number of extensions: 24034 Number of successful extensions: 130 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 122 Number of HSP's successfully gapped: 8 Length of query: 283 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 199 Effective length of database: 1,222,130 Effective search space: 243203870 Effective search space used: 243203870 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)