BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0112.p
         (208 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309638|ref|YP_003773730.1| CDP-diacylglycerol pyrophosphat...   218   3e-58

>gi|300309638|ref|YP_003773730.1| CDP-diacylglycerol pyrophosphatase
           [Herbaspirillum seropedicae SmR1]
          Length = 254

 Score =  218 bits (555), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 127/241 (52%), Positives = 147/241 (60%), Gaps = 42/241 (17%)

Query: 4   FFPLFALPFLLFAIAAPAHAANPDALWQIANEKCLPNSLASGDPAPCAMVDRESGFVILK 63
             PL AL   L     PA AA+P  LW+I +++C+P+  ASG P PCAMVD   GFVILK
Sbjct: 14  VLPLLAL--WLVGAPRPAMAADPHKLWEITSQQCVPHMQASGQPQPCAMVDLARGFVILK 71

Query: 64  DLVGAAQYLLIPTVRLSGIESRELQQAQWPNYWRHAWEQRGRXGL--------------- 108
           DLVG AQYLL+PT RL+GIES EL + Q PNYW +AW+QR R                  
Sbjct: 72  DLVGPAQYLLMPTRRLTGIESPELLEPQAPNYWAYAWQQRARVAQTLGRALSDEQLGVEV 131

Query: 109 -------------------------LRAHRHDPLGKWMPFMLEGHRYWVMRLEADALQSQ 143
                                    L AHR DPL +W P+  EGHRYWVMRL A+AL   
Sbjct: 132 NSAAGRSQLHLHLHIDCMRRDVAASLAAHRDDPLQQWRPWHFEGHRYWVMRLPAEALAQH 191

Query: 144 DPFKLAAARSEHAANAMGAQSLLLTGARFDGGDEGFYLINMPVNFDRGEFGSAEVLLDHD 203
           DPFKLAAARS +AA  M +QSLLLTGARF  G  GF+L+NMPVNFD  E GSAEVL+DHD
Sbjct: 192 DPFKLAAARSAYAAANMASQSLLLTGARFADGGSGFFLVNMPVNFDLQEQGSAEVLMDHD 251

Query: 204 C 204
           C
Sbjct: 252 C 252


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.138    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 563,388
Number of extensions: 20778
Number of successful extensions: 87
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 2
Length of query: 208
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 127
Effective length of database: 1,236,335
Effective search space: 157014545
Effective search space used: 157014545
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)