BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0103.p
         (709 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311592|ref|YP_003775684.1| ATP-dependent helicase superfam...  1066   0.0  

>gi|300311592|ref|YP_003775684.1| ATP-dependent helicase superfamily
           II protein [Herbaspirillum seropedicae SmR1]
          Length = 855

 Score = 1066 bits (2758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/742 (73%), Positives = 610/742 (82%), Gaps = 37/742 (4%)

Query: 1   MRALAADTARALEAPLNALLPTWTIGSRTGDTSGSERARQLRSLPSTLITTPESLSLLLS 60
           MRALAADT RAL+ PL  LLP W  G RTGDT  SERARQ+++LP  L+TTPESLSLLLS
Sbjct: 103 MRALAADTLRALQEPLPELLPHWQAGMRTGDTGSSERARQMKALPQVLVTTPESLSLLLS 162

Query: 61  QDDAAARFGKLDAIIVDEWHELMGSKRGVQTQLALARLRRWRPELMVWGLSATLGNLQQS 120
           Q DA  RFGKLDA+IVDEWHELMG+KRGVQ QLALARLRRWRP+++VWGLSATLGNL+QS
Sbjct: 163 QADARQRFGKLDAVIVDEWHELMGNKRGVQVQLALARLRRWRPQMVVWGLSATLGNLEQS 222

Query: 121 RDALLG---AGRGVLVQSKTRKKIVVDTLIPAHPSRFAWAGHLGLQMLPAVAAEIDRHAS 177
             ALLG   A +GVLV+ + RK+I++DTL+P  P+RFAWAGHLGLQMLP V AEID   S
Sbjct: 223 LQALLGPDQAAQGVLVRGQQRKRILIDTLLPPQPARFAWAGHLGLQMLPGVVAEIDSSNS 282

Query: 178 TLVFTNTRSQAELWYQNLLAARPDWAGLIALHHGSLDRAVREWVELAIKNGQLKAVVCTS 237
           TLVFTNTRSQAELWYQNLL ARPDWAGLIALHHGSLDR VREWVE  +++G+LKAVVCTS
Sbjct: 283 TLVFTNTRSQAELWYQNLLEARPDWAGLIALHHGSLDREVREWVEQGLRDGRLKAVVCTS 342

Query: 238 SLDLGVDFAPVERVLQVGSARGVARXARHA------------------------------ 267
           SLDLGVDF PVERVLQ+GS RGVAR  + A                              
Sbjct: 343 SLDLGVDFTPVERVLQIGSPRGVARLLQRAGRSGHAPGRVSRATLVPTNSLELVEAAAAQ 402

Query: 268 --VVAGQVEQRPVPDTPLDVLVQHLVTIALGGGFRSQELFDEVRTAYSYRALRPDQWQWA 325
             V AGQVEQRPVP+ PLDVLVQHLVTIALGGGFR  ELFDEVR A+SYRALR DQWQWA
Sbjct: 403 DAVAAGQVEQRPVPEAPLDVLVQHLVTIALGGGFRPDELFDEVRQAWSYRALREDQWQWA 462

Query: 326 LDFVARGGQSLTAYPEYQRVVPDADGVYRVPDAAIARRHRMSIGTIVSDASMQVQYLRGA 385
           LDFV RGGQSLTAYPEYQRV  DA+G+YRVP  AIA RHR++IGTIV+DAS+ VQYL+G 
Sbjct: 463 LDFVVRGGQSLTAYPEYQRVQADAEGIYRVPQPAIATRHRLNIGTIVADASLHVQYLKGG 522

Query: 386 RIGTIEEGFIARLRAGDRFLFGGRMLEFVRVHEMTAYVRRATSGSGAVPRWQGGRMPLSS 445
           RIGTIEEGFIARLR GDRFLFGGR+LEFVRVHEMTA+VRR++SGSGAVPRWQGGRMPLSS
Sbjct: 523 RIGTIEEGFIARLRPGDRFLFGGRVLEFVRVHEMTAWVRRSSSGSGAVPRWQGGRMPLSS 582

Query: 446 TLAHAVLDCLEEATHDDYSGPEMQAVQPLLALQQQWSALPTARKLVVEHLHSREGHHLFF 505
           TLAHAVLD LE+A    + GPEMQAV+PLLALQ  WSALPT ++LVVE L SREGHHLFF
Sbjct: 583 TLAHAVLDRLEQAAQARFDGPEMQAVEPLLALQHAWSALPTGQRLVVEALKSREGHHLFF 642

Query: 506 YPFAGRLVHVGLAALISYRLAQRRPATFSIAVNDYGFELLGAAPVDLAEIFPASDMGGAL 565
           YPFAGRLVH+GLA+L+++RLA+++ A+FSIAVNDYGFELLGA    L ++  A+     L
Sbjct: 643 YPFAGRLVHMGLASLLAWRLARQQAASFSIAVNDYGFELLGAQQAPLEQL--AAHQAQTL 700

Query: 566 FSSAHLLEDVIASLNATELTQRRFREIARISGLVFQGFPGQPKSTRQLQASASLFFEVFR 625
           FS   LL+DV++SLNATEL+QRRFREIARI+GLV QG+PGQ KS RQLQAS++LFFEVFR
Sbjct: 701 FSDHDLLQDVLSSLNATELSQRRFREIARIAGLVSQGYPGQHKSARQLQASSALFFEVFR 760

Query: 626 KHDAGNLLLTQAQTEVLEQELELQRLRETLEELRGRSLHVCSITRATPFGFPLMVERFRE 685
           KHDA NLLLTQAQ EVLEQELEL RLR TL ELR R+L +  + R TPF  PLMVERFRE
Sbjct: 761 KHDANNLLLTQAQREVLEQELELARLRSTLAELRARTLTLVRLQRPTPFALPLMVERFRE 820

Query: 686 KLSTEKLGDRVARMLQELEKAA 707
           KLSTEKL DRVARML+ELE AA
Sbjct: 821 KLSTEKLADRVARMLRELESAA 842


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.135    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,091,841
Number of extensions: 86125
Number of successful extensions: 265
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 262
Number of HSP's successfully gapped: 1
Length of query: 709
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 617
Effective length of database: 1,184,250
Effective search space: 730682250
Effective search space used: 730682250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 134 (56.2 bits)