BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0098.p
         (302 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313940|ref|YP_003778032.1| transcription factor jumonji, J...   395   e-111

>gi|300313940|ref|YP_003778032.1| transcription factor jumonji, JmjC
           protein [Herbaspirillum seropedicae SmR1]
          Length = 296

 Score =  395 bits (1016), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 191/295 (64%), Positives = 233/295 (78%), Gaps = 9/295 (3%)

Query: 11  ARLLPPRPQ-TPLSPEDALARKQAREQKDAEVRGVASIADMRDAIRRAGPPRGASGGLPV 69
           AR LPPRP    LS E A ARK AR+Q+DA +RGVAS+A+MR AIR       AS GLP 
Sbjct: 8   ARPLPPRPDLAKLSQEQAAARKLARDQRDARIRGVASVAEMRQAIR------AASAGLPA 61

Query: 70  ISEVPRVGVPDAGAFNALAAKGLPFIITGLVGKWPLCALTPQTLREEFGDLQVRARVGDY 129
           ++ +PR G     AF   AA GLPF+++G+  +WPL A+T   LR+ FG L VRARVGDY
Sbjct: 62  LAAIPRTGPLKTAAFRQRAAAGLPFLMSGMASRWPLAAMTLPDLRQHFGQLPVRARVGDY 121

Query: 130 VNTAFASDRAMQDMSLRNYLDLTA--DADLPPYVGNLEMRPLNRLCHWPAYFKKMGPPRF 187
           +NTAFA DRAMQDM+L +YL+  A  ++ LPPY+GNLE+R LNRLCHWP +F KMGPPRF
Sbjct: 122 INTAFAPDRAMQDMTLLDYLERAAADESGLPPYLGNLELRELNRLCHWPNFFDKMGPPRF 181

Query: 188 WLGPARTVTPLHCDYDDNIFAQIRGVKRIFLAPPHHDEFLYPREANAILFGSPFDPEEPD 247
           W+GPA  +TPLHCDYDDN+FAQ+ G KR++LAPPHHD++LYP+EANAILFGSPFDP+ PD
Sbjct: 182 WIGPAGCITPLHCDYDDNVFAQVWGSKRVWLAPPHHDQYLYPKEANAILFGSPFDPDHPD 241

Query: 248 FDKFPLARQAALTECIVQAGELLYVPAGWYHQVRALTFSLSANRWARGQPLVLGS 302
            ++FPLARQAAL  C VQ GE+LY+PAGWYHQV +LTFSLS+NRWARG+PLVL +
Sbjct: 242 LERFPLARQAALVCCEVQPGEMLYIPAGWYHQVSSLTFSLSSNRWARGRPLVLSA 296


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.139    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 958,352
Number of extensions: 38725
Number of successful extensions: 103
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 217
Effective length of database: 1,217,395
Effective search space: 264174715
Effective search space used: 264174715
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)