BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0096.p
         (396 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310362|ref|YP_003774454.1| galactonate dehydratase [Herbas...   200   2e-52

>gi|300310362|ref|YP_003774454.1| galactonate dehydratase
           [Herbaspirillum seropedicae SmR1]
          Length = 382

 Score =  200 bits (508), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 129/366 (35%), Positives = 197/366 (53%), Gaps = 15/366 (4%)

Query: 18  QFLYARIRTEAGLTGYGEAGSWGHIEAAKAALEKFGKYLVGQDANQIELHWNIMQRFSHF 77
           ++ + +I T+ G+ G+GE    G   +  AA+E+   YL+G+D   IE HW ++ R   +
Sbjct: 14  RWCFLKIETDEGVVGWGEPIVEGRAHSVAAAVEELSDYLIGKDPRNIEDHWTVLYRGGFY 73

Query: 78  RGTAVN-AAVSAIDIALWDLLGKRLQAXRVPPVWQLLGGAYRNKLRVYGHVYAETLEEVL 136
           RG A++ +A++ ID ALWD+ GK L      PV QLLGGA RN +RVY  +  +   +  
Sbjct: 74  RGGAIHMSALAGIDQALWDIKGKDLGV----PVHQLLGGAVRNSIRVYSWIGGDRPADTA 129

Query: 137 SECRRLREEGFTAVGHINPFLDEPEGHEYFRSHAGKVRDAKERVMAFREAVGPDVDLLIE 196
           +  +     GFTAV      ++  E  ++  SH  K+      V A REAVGP+V + ++
Sbjct: 130 AAAKSAVARGFTAVK-----MNGTEELQFIDSH-DKIELTLANVQAVREAVGPNVGIGVD 183

Query: 197 MHRRLSPAEAIAIGQVLEPLTPMWLEDPLRPEFYAQMTTVGHAIRVPIATGERFCTPAEF 256
            H R+    A A+ + LEP   M++E+P+  E    +  + H    PIA GER  +  +F
Sbjct: 184 FHGRVHKPMAKALIKELEPYKLMFIEEPVLSENAEALKEIAHLTSTPIALGERLYSRWDF 243

Query: 257 QQQLAGGGVRYARASVCVCGGITGAKKIAALAEAQNVDLAPHNPLSPISLAACMQVAAAV 316
           ++ L+ G V   +  V   GGIT  +KIA +AEA +V LA H PL PI+LA+C+QV A  
Sbjct: 244 KRILSEGYVDIIQPDVSHAGGITETRKIAMMAEAYDVALALHCPLGPIALASCLQVDAGS 303

Query: 317 PNFAIQEYPTGFENLVLKSGQKLLGSDLVKSHPVPQAGFIAVPDAPGIGVELVDEVEFKR 376
            N  IQE   G           LL     K+    + G++ +P  PG+G+E+ +E   +R
Sbjct: 304 YNAFIQEQSLGIH---YNESNDLLDYIRDKNVFAYEDGYVKIPQGPGLGIEINEEYVRQR 360

Query: 377 APL-HR 381
           A + HR
Sbjct: 361 AEVGHR 366


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,340,891
Number of extensions: 60304
Number of successful extensions: 167
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 309
Effective length of database: 1,207,925
Effective search space: 373248825
Effective search space used: 373248825
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)