BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0086.p (539 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313723|ref|YP_003777815.1| chaperonin GroEL [Herbaspirillu... 939 0.0 gi|300310329|ref|YP_003774421.1| chaperonin GroEL [Herbaspirillu... 798 0.0 >gi|300313723|ref|YP_003777815.1| chaperonin GroEL [Herbaspirillum seropedicae SmR1] Length = 540 Score = 939 bits (2426), Expect = 0.0, Method: Compositional matrix adjust. Identities = 465/521 (89%), Positives = 503/521 (96%) Query: 1 MSAKDVQFHDNARARIVKGVNVLADAVKVTLGPKGRNVLLDRSFGAPIITKDGVSVAKEV 60 MSAK V+FHD ARARIVKGVNVLADAVKVTLGPKGRNVLLDRSFGAP+ITKDGVSVAKE+ Sbjct: 1 MSAKQVKFHDTARARIVKGVNVLADAVKVTLGPKGRNVLLDRSFGAPVITKDGVSVAKEI 60 Query: 61 ELKDRLENMGAQVVKQVASKTADVAGDGTTTATVLAQSIVQEGMKYVAAGMNPMDLKRGI 120 ELKDRLENMGAQVVKQVASKTADVAGDGTTTATVLAQSIVQEGMKYVAAGMNPMDLKRGI Sbjct: 61 ELKDRLENMGAQVVKQVASKTADVAGDGTTTATVLAQSIVQEGMKYVAAGMNPMDLKRGI 120 Query: 121 DKAVSAAIDELKKISRPITTNKEIAQVGSISANSDEAIGNIIAQAMERVGKEGVITVEDG 180 DKAV+AAIDEL+KISRPITTNKEIAQVG+ISANSDEAIGNIIAQAM++VGKEGVITVEDG Sbjct: 121 DKAVTAAIDELRKISRPITTNKEIAQVGAISANSDEAIGNIIAQAMDKVGKEGVITVEDG 180 Query: 181 KSLDNELDVVEGMQFDRGYLSPYFINDPDKQLAKLEDPLILLYDKKISNIRELLPILETS 240 KSL+NELDVVEGMQFDRGYLSPYFINDPDKQL +L+DPL+LLYDKKIS+IRELLP+LE + Sbjct: 181 KSLENELDVVEGMQFDRGYLSPYFINDPDKQLCQLDDPLVLLYDKKISSIRELLPVLEMT 240 Query: 241 AKAGKPLFIIAEDIEGEALATLVVNSVRGVLKVAAVKAPGFGDRRKAMLEDIAILTGATV 300 AKAGKPLFI+AEDI+GEALATLVVNSVRGVLKVAAVKAPGFGDRRKAMLED+A+LTG TV Sbjct: 241 AKAGKPLFIVAEDIDGEALATLVVNSVRGVLKVAAVKAPGFGDRRKAMLEDLAVLTGGTV 300 Query: 301 ISEETGHTLEKASLQELGSAKRIEVLKDVTTIIDGAGEQKKIDARVASIQTQIEQAASDY 360 ISEETG +LEK +L++LGSAKR+EV KD TT+IDGAG Q KIDARV +IQ QIE+ SDY Sbjct: 301 ISEETGKSLEKTALEDLGSAKRVEVRKDSTTVIDGAGAQDKIDARVKAIQAQIEETTSDY 360 Query: 361 DKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVDDALHATRAAVEEGIVPGGGVALL 420 D+EKLQERVAKLAGGVAVIK+GAATEVEMKEKKDRVDDALHATRAAVEEGIVPGGGVALL Sbjct: 361 DREKLQERVAKLAGGVAVIKIGAATEVEMKEKKDRVDDALHATRAAVEEGIVPGGGVALL 420 Query: 421 RARAAISKLEGANADQNAGVQIVLRALEAPLRVIASNAGDEPSVVVAKVMAGKGDFGYNA 480 RARAAISKLEGANADQNAG+QIVLRALEAPLRVIA+NAGDEPSVVVAKV +GKG+FGYNA Sbjct: 421 RARAAISKLEGANADQNAGIQIVLRALEAPLRVIAANAGDEPSVVVAKVYSGKGNFGYNA 480 Query: 481 ATGEYGDLVKTGVIDPTKVTRTALQNAASIAALILTTDATV 521 A GEYGD+V+ GV+DPTKVTRTALQNAAS+A+LILTTDATV Sbjct: 481 ANGEYGDMVELGVVDPTKVTRTALQNAASVASLILTTDATV 521 >gi|300310329|ref|YP_003774421.1| chaperonin GroEL [Herbaspirillum seropedicae SmR1] Length = 549 Score = 798 bits (2061), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/531 (75%), Positives = 467/531 (87%), Gaps = 2/531 (0%) Query: 1 MSAKDVQFHDNARARIVKGVNVLADAVKVTLGPKGRNVLLDRSFGAPIITKDGVSVAKEV 60 M+AK V F D ARA++V GVN+LA+AVKVTLGPKGRNV+L+RSFGAP +TKDGVSVAKE+ Sbjct: 1 MAAKQVIFGDEARAKVVNGVNILANAVKVTLGPKGRNVVLERSFGAPTVTKDGVSVAKEI 60 Query: 61 ELKDRLENMGAQVVKQVASKTADVAGDGTTTATVLAQSIVQEGMKYVAAGMNPMDLKRGI 120 ELKD+LENMGAQ+VK+VASKT+D AGDGTTTATVLAQ+IV+EG KYVAAG NP DLKRGI Sbjct: 61 ELKDKLENMGAQLVKEVASKTSDNAGDGTTTATVLAQAIVREGFKYVAAGFNPTDLKRGI 120 Query: 121 DKAVSAAIDELKKISRPITTNKEIAQVGSISANSDEAIGNIIAQAMERVGKEGVITVEDG 180 DKAV+A + E+K +++P TT+KEIAQVGSISANSD IG+IIA+AME+VGKEGVITVEDG Sbjct: 121 DKAVTAIVGEVKNLAKPTTTSKEIAQVGSISANSDADIGDIIAKAMEKVGKEGVITVEDG 180 Query: 181 KSLDNELDVVEGMQFDRGYLSPYFINDPDKQLAKLEDPLILLYDKKISNIRELLPILETS 240 KSL+NELD+VEGMQFDRGYLSPYFIN+ +KQ+ L++P ILL+DKKISNIR+LLP+LE Sbjct: 181 KSLENELDIVEGMQFDRGYLSPYFINNQEKQIVALDNPFILLFDKKISNIRDLLPVLEQV 240 Query: 241 AKAGKPLFIIAEDIEGEALATLVVNSVRGVLKVAAVKAPGFGDRRKAMLEDIAILTGATV 300 AKAG+PL I+AED+EGEALATLVVN++RG+LK AAVKAPGFGDRRKAMLEDIAILTG V Sbjct: 241 AKAGRPLLIVAEDVEGEALATLVVNNIRGILKTAAVKAPGFGDRRKAMLEDIAILTGGQV 300 Query: 301 ISEETGHTLEKASLQELGSAKRIEVLKDVTTIIDGAGEQKKIDARVASIQTQIEQAASDY 360 I+EE G TLEKA+L ELG AKR+E+ K+ TTIIDG GE I+ARVA I+TQI +A SDY Sbjct: 301 IAEEVGLTLEKATLAELGQAKRVEIGKENTTIIDGNGEAAGIEARVAMIRTQIGEATSDY 360 Query: 361 DKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVDDALHATRAAVEEGIVPGGGVALL 420 D+EKLQERVAKLAGGVA+IKVGAATEVEMKEKK RV+DALHATRAAVEEG+VPGGGVALL Sbjct: 361 DREKLQERVAKLAGGVALIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALL 420 Query: 421 RARAAISKLEGANADQNAGVQIVLRALEAPLRVIASNAGDEPSVVVAKVMAGKGDFGYNA 480 RARA + L+G N DQ AG++IVLRA+E PLR I NAGDEPSVVV KV+ G G+FGYNA Sbjct: 421 RARANVKDLKGDNPDQEAGIKIVLRAIEEPLRQIVFNAGDEPSVVVNKVLEGSGNFGYNA 480 Query: 481 ATGEYGDLVKTGVIDPTKVTRTALQNAASIAALILTTDATVSDAPVEEKTP 531 + G YGDLV+ GV+DP KVTR+ALQNAAS+A+LILTTDA V A V E P Sbjct: 481 SNGTYGDLVELGVLDPAKVTRSALQNAASVASLILTTDALV--AEVAEDKP 529 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.312 0.131 0.344 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,422,770 Number of extensions: 54811 Number of successful extensions: 214 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 213 Number of HSP's successfully gapped: 2 Length of query: 539 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 449 Effective length of database: 1,193,720 Effective search space: 535980280 Effective search space used: 535980280 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 133 (55.8 bits)