BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0080.p (199 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 202 2e-53 gi|300312448|ref|YP_003776540.1| methyl-accepting chemotaxis tra... 200 7e-53 gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis tra... 196 9e-52 gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sen... 194 3e-51 gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis pro... 194 4e-51 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 202 bits (513), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 120/180 (66%), Positives = 138/180 (76%), Gaps = 7/180 (3%) Query: 5 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKALIDDS 64 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AAKEIK LI+DS Sbjct: 362 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELINDS 421 Query: 65 VKRVSNGSMQVERAGATMANVVSSVKRVTSIVHEISEASQEQAEGIEQVNDTVTQLDHVT 124 V +V +GS VE+AG TM VVSSV+RVT IV EIS AS EQ GIEQ+N +TQ+D VT Sbjct: 422 VGKVDDGSRLVEQAGNTMQEVVSSVRRVTDIVAEISAASTEQTHGIEQINLAITQMDQVT 481 Query: 125 QQNAALVEEAASAADAMQQQAANLAKLVSVFITDSSAPVADSNVAASHMATKASPASPAL 184 QQNAALVEEAA+AA +MQ QA L ++VSVF P+ + +P+SP L Sbjct: 482 QQNAALVEEAAAAAASMQTQAGRLMQMVSVFRLSEREPLVRREI-------DVTPSSPVL 534 >gi|300312448|ref|YP_003776540.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 596 Score = 200 bits (508), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 125/183 (68%), Positives = 144/183 (78%), Gaps = 11/183 (6%) Query: 5 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKALIDDS 64 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIK+LIDDS Sbjct: 363 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKSLIDDS 422 Query: 65 VKRVSNGSMQVERAGATMANVVSSVKRVTSIVHEISEASQEQAEGIEQVNDTVTQLDHVT 124 V++V GS VE+AGATM+ VV+SV+RVT IV EI+EAS+EQ+ GIEQVN +TQ+D VT Sbjct: 423 VEKVEAGSQLVEQAGATMSEVVTSVQRVTDIVGEIAEASREQSTGIEQVNRAITQMDEVT 482 Query: 125 QQNAALVEEAASAADAMQQQAANLAKLVSVFITDSSAPVADSNVAASHMATKASPASPAL 184 QQNAALVEEAA+AA ++Q QA NL VS+F + A +A PAS Sbjct: 483 QQNAALVEEAAAAAQSLQAQATNLVGAVSIF-----------KIEAHQVAPAGKPASKPR 531 Query: 185 SAP 187 +AP Sbjct: 532 AAP 534 >gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 196 bits (499), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 115/151 (76%), Positives = 132/151 (87%) Query: 5 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKALIDDS 64 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AAKEIKALIDDS Sbjct: 361 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKALIDDS 420 Query: 65 VKRVSNGSMQVERAGATMANVVSSVKRVTSIVHEISEASQEQAEGIEQVNDTVTQLDHVT 124 V RV NGS VE+AG TM VV+SV+RVT +V EIS AS EQ++GIEQ+N +TQ+D VT Sbjct: 421 VSRVDNGSRLVEQAGTTMTEVVASVRRVTDVVAEISAASNEQSDGIEQINHAITQMDQVT 480 Query: 125 QQNAALVEEAASAADAMQQQAANLAKLVSVF 155 QQNAALVEEAA+AA ++Q+Q+ L+ VSVF Sbjct: 481 QQNAALVEEAAAAAQSLQEQSTRLSATVSVF 511 >gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 684 Score = 194 bits (494), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 114/157 (72%), Positives = 131/157 (83%) Query: 5 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKALIDDS 64 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK LIDDS Sbjct: 441 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIKGLIDDS 500 Query: 65 VKRVSNGSMQVERAGATMANVVSSVKRVTSIVHEISEASQEQAEGIEQVNDTVTQLDHVT 124 V++V GS V +AG+TM VVSSV+RVT IV EIS ASQEQ+ GI +V + V Q+D T Sbjct: 501 VQKVETGSQLVAQAGSTMEEVVSSVRRVTDIVGEISAASQEQSSGITEVGNAVNQMDEAT 560 Query: 125 QQNAALVEEAASAADAMQQQAANLAKLVSVFITDSSA 161 QQNAALVE+AA+AA ++Q+QAA+LA +V+ F D S Sbjct: 561 QQNAALVEQAAAAAKSLQEQAAHLAAVVAGFKLDESG 597 >gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 516 Score = 194 bits (493), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 116/151 (76%), Positives = 134/151 (88%) Query: 5 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKALIDDS 64 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AAKEIK LIDDS Sbjct: 362 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDDS 421 Query: 65 VKRVSNGSMQVERAGATMANVVSSVKRVTSIVHEISEASQEQAEGIEQVNDTVTQLDHVT 124 V++V GS VERAGATM+ VV+SV+RVT +V EIS AS EQ+ GIE++N +TQ+D VT Sbjct: 422 VEKVGAGSQLVERAGATMSEVVASVRRVTDVVAEISAASNEQSTGIEEINRAITQMDEVT 481 Query: 125 QQNAALVEEAASAADAMQQQAANLAKLVSVF 155 QQNAALVEEAA+AA ++Q QAA L+++VSVF Sbjct: 482 QQNAALVEEAAAAAQSLQDQAARLSQVVSVF 512 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.310 0.118 0.297 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 320,019 Number of extensions: 6890 Number of successful extensions: 182 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 166 Number of HSP's successfully gapped: 71 Length of query: 199 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 118 Effective length of database: 1,236,335 Effective search space: 145887530 Effective search space used: 145887530 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 128 (53.9 bits)