BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0079.p (243 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporte... 390 e-110 gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPa... 290 1e-79 gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPa... 278 2e-76 gi|300309583|ref|YP_003773675.1| amino acid ABC transporter ATPa... 272 2e-74 gi|300313887|ref|YP_003777979.1| amino acid ABC transporter ATPa... 256 1e-69 >gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 390 bits (1003), Expect = e-110, Method: Compositional matrix adjust. Identities = 188/241 (78%), Positives = 210/241 (87%) Query: 1 MSLIVIENVKKSYGNNAVLRGIDLEINPGEVIAIIGKSGSGKSTLLRCINGLETIDEGLI 60 M LI I+NVKK +G+N VL+GI L++ PGEVIAIIGKSGSGKSTLLRCINGLE+IDEG I Sbjct: 1 MPLIAIDNVKKRFGDNEVLKGISLDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGNI 60 Query: 61 SVGDVLLGRSERELRELRLRVGMIFQQFNLFPHLSVGRNVMISPIIVKGAKEQQAREIAQ 120 SV LG SE ELR LRL+VGMIFQQFNLFPHLSVGRNVMI+P+IVKG E +A + A+ Sbjct: 61 SVAGAKLGASELELRNLRLKVGMIFQQFNLFPHLSVGRNVMIAPMIVKGVSEAEAMKTAK 120 Query: 121 QNLTRVGLAEKFDSYPDQLSGGQQQRVAIARALSMQPKALLCDEITSALDPELVNEVLGV 180 NL +VGL KFD+YPDQLSGGQQQRVAIARALSM P+ALLCDEITSALDPELVNEVL V Sbjct: 121 ANLEKVGLGHKFDAYPDQLSGGQQQRVAIARALSMSPQALLCDEITSALDPELVNEVLTV 180 Query: 181 VRKLATEGMTLVMVTHEMRFAREVCDRVVFMHQGRVHEIGPPEEFFSKPKTPELQQFLGM 240 +R LA EGMTL+MVTHEMRFAREVC+R+VFMHQG+VHEIGPPEE F PKTPELQQF+GM Sbjct: 181 MRGLAKEGMTLLMVTHEMRFAREVCNRLVFMHQGKVHEIGPPEELFGNPKTPELQQFIGM 240 Query: 241 V 241 Sbjct: 241 T 241 >gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 290 bits (741), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 141/239 (58%), Positives = 178/239 (74%) Query: 1 MSLIVIENVKKSYGNNAVLRGIDLEINPGEVIAIIGKSGSGKSTLLRCINGLETIDEGLI 60 M ++ I N+ K +G+N VL GI L + G+V+AIIG+SGSGKST+LRCINGLETID G I Sbjct: 1 MPIVEINNITKRFGSNQVLNGISLSVERGQVVAIIGRSGSGKSTMLRCINGLETIDGGSI 60 Query: 61 SVGDVLLGRSERELRELRLRVGMIFQQFNLFPHLSVGRNVMISPIIVKGAKEQQAREIAQ 120 +V L L ELR VGM+FQ +NLFPHL+V N+M+SP IVK + ARE A Sbjct: 61 TVAGHKLTHKHEHLIELRKDVGMVFQHYNLFPHLTVEENIMLSPRIVKKTATETARETAI 120 Query: 121 QNLTRVGLAEKFDSYPDQLSGGQQQRVAIARALSMQPKALLCDEITSALDPELVNEVLGV 180 + L +VGL K D+YP+QLSGGQQQRVAIAR+L+M+P+ +L DE+TSALDPEL EVL V Sbjct: 121 KVLKQVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELTAEVLKV 180 Query: 181 VRKLATEGMTLVMVTHEMRFAREVCDRVVFMHQGRVHEIGPPEEFFSKPKTPELQQFLG 239 + +LA GMT+++VTHEM FAR V D VFMHQG+V E P EEFF+ P+TPE +QF+G Sbjct: 181 MEELARGGMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSEEFFADPQTPEARQFIG 239 >gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 278 bits (712), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 138/240 (57%), Positives = 182/240 (75%), Gaps = 2/240 (0%) Query: 1 MSLIV-IENVKKSYGNNAVLRGIDLEINPGEVIAIIGKSGSGKSTLLRCINGLETIDEGL 59 MS IV I+++ KS+G+N VL G+ L++ G+++AIIGKSGSGKSTLLRC+NGLE +D G Sbjct: 1 MSAIVKIKDLHKSFGSNKVLNGVSLDVQKGQMVAIIGKSGSGKSTLLRCLNGLEKVDAGD 60 Query: 60 ISV-GDVLLGRSERELRELRLRVGMIFQQFNLFPHLSVGRNVMISPIIVKGAKEQQAREI 118 I V G + + LRELR +VG++FQ +NLFPHL+V RN+ ++ +K +QA+ I Sbjct: 61 IQVCGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTEQAKTI 120 Query: 119 AQQNLTRVGLAEKFDSYPDQLSGGQQQRVAIARALSMQPKALLCDEITSALDPELVNEVL 178 A + L VGL K D+YP+QLSGGQ QRVAIAR+L+M P+ +L DE+TSALDPEL EVL Sbjct: 121 AHKVLQLVGLENKKDAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEVL 180 Query: 179 GVVRKLATEGMTLVMVTHEMRFAREVCDRVVFMHQGRVHEIGPPEEFFSKPKTPELQQFL 238 V+ LA GMT+V+VTHEM FAR++ D +VFMHQG+V EIGPP+E FS PKT ELQ+F+ Sbjct: 181 KVMEDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEIGPPDELFSHPKTAELQKFV 240 >gi|300309583|ref|YP_003773675.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 272 bits (696), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 135/238 (56%), Positives = 178/238 (74%), Gaps = 1/238 (0%) Query: 2 SLIVIENVKKSYGNNAVLRGIDLEINPGEVIAIIGKSGSGKSTLLRCINGLETIDEGLIS 61 +++ ++ V K +G+N VLRG+ ++ GEV+AIIGKSGSGKST LRCIN LE ID G IS Sbjct: 3 TVVELQGVHKRFGSNTVLRGVSFQVARGEVVAIIGKSGSGKSTALRCINRLEQIDAGQIS 62 Query: 62 VGDVLLGRSERELRELRLRVGMIFQQFNLFPHLSVGRNVMISPIIVKGAKEQQAREIAQQ 121 V L + +LR LR VG++FQ +NLFPHL+V +N+ + P VK QA+ +AQQ Sbjct: 63 VCGHALHAAGLDLRGLRRDVGIVFQGYNLFPHLTVLQNITLGPTAVKRMPADQAQTLAQQ 122 Query: 122 NLTRVGLAEKFDSYPDQLSGGQQQRVAIARALSMQPKALLCDEITSALDPELVNEVLGVV 181 L RVGLA+K +YP+QLSGGQQQRVAIAR+L++QP+ +L DE+TSALDPEL EVL V+ Sbjct: 123 VLARVGLADKAGAYPEQLSGGQQQRVAIARSLALQPQLMLFDEVTSALDPELTGEVLKVM 182 Query: 182 RKLATEGMTLVMVTHEMRFAREVCDRVVFMHQGRVHEIGPPEEFFSKPKTPELQQFLG 239 ++A+EGMT+++VTHEM FAR V D+V+FMHQG+V E G P E P TPEL+ F+G Sbjct: 183 EQMASEGMTMILVTHEMAFARRVADQVIFMHQGQVWEQGGP-EILDAPVTPELRSFVG 239 >gi|300313887|ref|YP_003777979.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 264 Score = 256 bits (653), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 130/237 (54%), Positives = 173/237 (72%), Gaps = 1/237 (0%) Query: 3 LIVIENVKKSYGNNAVLRGIDLEINPGEVIAIIGKSGSGKSTLLRCINGLETIDEGLISV 62 ++ ++ V KS+G+N VL+G+ E+ GE+IAIIG SGSGKST LRCI+ LETID G I V Sbjct: 26 IVKLDQVYKSFGDNQVLKGVSFEVARGEMIAIIGASGSGKSTALRCIDRLETIDSGSIEV 85 Query: 63 GDVLLGRSERELRELRLRVGMIFQQFNLFPHLSVGRNVMISPIIVKGAKEQQAREIAQQN 122 + + + +L +LR VG++FQ +NLFPHL+V NVM++ VK + +AR +A Sbjct: 86 AGIRVDDPQVDLHKLRREVGIVFQSYNLFPHLNVLENVMLALRHVKQQDKAEARRVALAA 145 Query: 123 LTRVGLAEKFDSYPDQLSGGQQQRVAIARALSMQPKALLCDEITSALDPELVNEVLGVVR 182 L +VGL EK ++YP+QLSGGQQQRVAIAR+L+M PK +L DE+TSALDP+L EVL V+ Sbjct: 146 LAQVGLDEKANAYPEQLSGGQQQRVAIARSLAMAPKVMLFDEVTSALDPQLTGEVLRVME 205 Query: 183 KLATEGMTLVMVTHEMRFAREVCDRVVFMHQGRVHEIGPPEEFFSKPKTPELQQFLG 239 LA GMT+++VTHEM FA+ V DR+++MHQGRV E+G P E P TPELQ FL Sbjct: 206 DLAANGMTMLLVTHEMNFAKRVADRIIYMHQGRVWEVG-PGEMLDHPYTPELQAFLA 261 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.138 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 671,259 Number of extensions: 24516 Number of successful extensions: 530 Number of sequences better than 1.0e-08: 131 Number of HSP's gapped: 281 Number of HSP's successfully gapped: 147 Length of query: 243 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 160 Effective length of database: 1,226,865 Effective search space: 196298400 Effective search space used: 196298400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)