BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0078.p (218 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313167|ref|YP_003777259.1| amino acid ABC transporter perm... 238 2e-64 gi|300310828|ref|YP_003774920.1| amino acid ABC transporter perm... 238 2e-64 gi|300313888|ref|YP_003777980.1| amino acid ABC transporter perm... 226 1e-60 gi|300309584|ref|YP_003773676.1| amino acid ABC transporter perm... 185 2e-48 gi|300311471|ref|YP_003775563.1| amino acid ABC transporter perm... 116 1e-27 >gi|300313167|ref|YP_003777259.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 216 Score = 238 bits (608), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 113/208 (54%), Positives = 152/208 (73%) Query: 10 VRNLLLALRWTVALSLLSFLMGGTLGIVLLFMRNSRYRILRDIIRVYIEVFQGTPLLMQL 69 V LL A WTV LSL++F+ GG G V+ R S +LR I YI+V QG PLL+ L Sbjct: 9 VEYLLQAAVWTVVLSLVAFVFGGVAGFVIALWRVSPNAVLRGIASGYIQVVQGIPLLVIL 68 Query: 70 FLVFFGIALFGIEVPAWLAAGVALTLWSASFLAEIWRGCVDAIPRGQWEASACLAMNRFQ 129 F+ +FG+A+ G ++ +AAG++ ++ A+FL EIWRGC+ A+P+ QWEAS CL NRF+ Sbjct: 69 FVAYFGLAIAGFKLTPLVAAGISFAIYCAAFLGEIWRGCIQAVPKTQWEASECLGFNRFE 128 Query: 130 QMRHIVLPQALRIAIPPTVGFGVQIIKGTAVTSIIGFVELSKAGTIITNATFQPFIVFGL 189 Q+ ++LPQA++IA PPTVGF VQI+K T++ S+IGFV+LS+AG II N+TFQPF VFG Sbjct: 129 QLTKVILPQAVKIATPPTVGFMVQIVKNTSLASVIGFVDLSRAGQIINNSTFQPFTVFGC 188 Query: 190 VGLMYFVLCWPLSKYSQFLERKFNVAHR 217 V L+YF LC+PLS S+ ERK NV+HR Sbjct: 189 VALIYFCLCFPLSALSKHFERKLNVSHR 216 >gi|300310828|ref|YP_003774920.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 216 Score = 238 bits (608), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 112/205 (54%), Positives = 162/205 (79%), Gaps = 1/205 (0%) Query: 13 LLLALRWTVALSLLSFLMGGTLGIVLLFMRNSRYRILRDIIRVYIEVFQGTPLLMQLFLV 72 LL A RWT+ LS L+FL GG G ++ MR S LR + VYI++ QGTP+L+ LFL Sbjct: 13 LLEAARWTLLLSALAFLGGGIAGFIVALMRTSHLAPLRLLSAVYIQIIQGTPVLILLFLS 72 Query: 73 FFGIALFGIEVPAWLAAGVALTLWSASFLAEIWRGCVDAIPRGQWEASACLAMNRFQQMR 132 F+G+A+FG ++P +AA +A+T++S+++L EIWRGC++A+P QWEAS LAM R+QQ+R Sbjct: 73 FYGLAIFGYKLPPMVAATIAMTIYSSAYLGEIWRGCIEAVPVPQWEASTALAMTRWQQLR 132 Query: 133 HIVLPQALRIAIPPTVGFGVQIIKGTAVTSIIGFVELSKAGTIITNATFQPFIVFGLVGL 192 +++LPQA+RI++PPTVGF VQI+K T++ SIIG VEL++AG +++NATFQPF+VF +V Sbjct: 133 YVILPQAVRISLPPTVGFLVQIVKNTSIASIIGLVELAQAGKLVSNATFQPFLVFPIVAG 192 Query: 193 MYFVLCWPLSKYSQFLERKFNVAHR 217 +YFV C+PLS+++ LERK++ AHR Sbjct: 193 IYFVFCYPLSRFAFALERKYH-AHR 216 >gi|300313888|ref|YP_003777980.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 217 Score = 226 bits (575), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 105/217 (48%), Positives = 166/217 (76%) Query: 1 MIGFTIWDIVRNLLLALRWTVALSLLSFLMGGTLGIVLLFMRNSRYRILRDIIRVYIEVF 60 M+G W ++ ++ WT+ LS L+F++GG G +++ R S + LR ++IE Sbjct: 1 MMGGFSWTYFFFMVQSIGWTLVLSALAFVLGGAGGFLVMLARISPHAWLRRPAILFIECV 60 Query: 61 QGTPLLMQLFLVFFGIALFGIEVPAWLAAGVALTLWSASFLAEIWRGCVDAIPRGQWEAS 120 QG PLL+ LF+V+FG++++G+ +PA +AAG+A+ ++++++L +IWRGCV+A+PR QWEAS Sbjct: 61 QGIPLLILLFIVYFGLSVYGLVLPALVAAGLAMMIYTSAYLGDIWRGCVEAMPRPQWEAS 120 Query: 121 ACLAMNRFQQMRHIVLPQALRIAIPPTVGFGVQIIKGTAVTSIIGFVELSKAGTIITNAT 180 CL++ R+Q +R +++PQA R+++PPT+GF VQ+IK T++ S+IGFVEL++AG II N+ Sbjct: 121 ECLSLTRWQTLRLVIIPQATRLSLPPTIGFLVQLIKMTSLASVIGFVELTRAGQIINNSI 180 Query: 181 FQPFIVFGLVGLMYFVLCWPLSKYSQFLERKFNVAHR 217 FQPF+VF LVG YF+LC+PLS++S +ERK NV+HR Sbjct: 181 FQPFLVFLLVGSFYFLLCYPLSRWSASMERKLNVSHR 217 >gi|300309584|ref|YP_003773676.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 215 Score = 185 bits (470), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 90/179 (50%), Positives = 130/179 (72%), Gaps = 3/179 (1%) Query: 42 RNSRYRILRDIIRVYIEVFQGTPLLMQLFLVFFGIALFGI-EVPAWLAAGVALTLWSASF 100 R S R LR + +I++ QGTPLL+ + + F+G AL G+ V A AA A+ +++++F Sbjct: 38 RVSALRPLRRLAAAWIQLIQGTPLLVLMGVCFYGPALAGVGTVEALPAAATAMLIYTSAF 97 Query: 101 LAEIWRGCVDAIPRGQWEASACLAMNRFQQMRHIVLPQALRIAIPPTVGFGVQIIKGTAV 160 L EIWRGC+ ++ + QWEA+ C+ ++R+Q+MR IVLPQALR+A PPTVGF VQ+IK T+V Sbjct: 98 LGEIWRGCIQSVHKSQWEAAECIGLSRWQRMRMIVLPQALRMATPPTVGFAVQVIKNTSV 157 Query: 161 TS-IIGFVELSKAGTIITNATFQPFIVFGLVGLMYFVLCWPLSKYSQFLERKFNVAHRH 218 S +IGF ELS ++ N+TFQPF+ FG L+YF +C+PLS++S+ LERK + AHR Sbjct: 158 ASLVIGFAELSYNAKVLNNSTFQPFLYFGSAALLYFAMCYPLSRWSRALERKLH-AHRR 215 >gi|300311471|ref|YP_003775563.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 221 Score = 116 bits (290), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 65/199 (32%), Positives = 112/199 (56%) Query: 19 WTVALSLLSFLMGGTLGIVLLFMRNSRYRILRDIIRVYIEVFQGTPLLMQLFLVFFGIAL 78 +T+ +L S L G LG VL R +R + +Y+ + +GTPLL+Q+F+V++G+ Sbjct: 22 YTLLFALASMLGGLVLGFVLAVARIVPWRPIHWPAAIYVSMMRGTPLLVQIFVVYYGLPG 81 Query: 79 FGIEVPAWLAAGVALTLWSASFLAEIWRGCVDAIPRGQWEASACLAMNRFQQMRHIVLPQ 138 GIE A + L+L ++++L+E RG + + RGQW A+ + + FQ +R+I++PQ Sbjct: 82 MGIEFSPLTAGVLTLSLNASAYLSESLRGAILGVTRGQWNAAFSVGLTYFQTLRYIIVPQ 141 Query: 139 ALRIAIPPTVGFGVQIIKGTAVTSIIGFVELSKAGTIITNATFQPFIVFGLVGLMYFVLC 198 A+RIA+P + +IK T++ S+I EL A + TF+P ++ +Y++L Sbjct: 142 AVRIAVPSMSNTLISLIKDTSLVSVITVTELMLATKEVIAVTFRPLPLYVAAAAIYWMLS 201 Query: 199 WPLSKYSQFLERKFNVAHR 217 LE+K AH+ Sbjct: 202 LCFEALQHRLEKKLGKAHQ 220 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.334 0.145 0.466 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 680,010 Number of extensions: 27159 Number of successful extensions: 182 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 174 Number of HSP's successfully gapped: 19 Length of query: 218 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 136 Effective length of database: 1,231,600 Effective search space: 167497600 Effective search space used: 167497600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.6 bits) S2: 128 (53.9 bits)