BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0073.p
         (413 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313709|ref|YP_003777801.1| L-glutamine:D-fructose-6-phosph...   751   0.0  
gi|300313838|ref|YP_003777930.1| glucosamine 6-phosphate synthas...   109   5e-25

>gi|300313709|ref|YP_003777801.1| L-glutamine:D-fructose-6-phosphate
           aminotransferase [Herbaspirillum seropedicae SmR1]
          Length = 605

 Score =  751 bits (1940), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/413 (90%), Positives = 399/413 (96%)

Query: 1   MALAGTTDQIIYLEEGDVVDLQLQRYWIVDAAGKSVAREVKTVQAFTSAVELGPYQHYMQ 60
           MALAGTTDQIIYLEEGDVVDLQLQ+ WIVDAAG+   REV+TVQA+TSAVELGPYQHYMQ
Sbjct: 193 MALAGTTDQIIYLEEGDVVDLQLQKVWIVDAAGRPAEREVRTVQAYTSAVELGPYQHYMQ 252

Query: 61  KEIFEQPRAIADTLEGVSGIMPELFGDGAHKVFKSVDSILILACGTSYYSGLTAKYWLES 120
           KEIFEQPRAIADTLEGV GIMPELFGD A+KVFK +DSILILACGTSYY+GLTAKYWLES
Sbjct: 253 KEIFEQPRAIADTLEGVVGIMPELFGDKAYKVFKEIDSILILACGTSYYAGLTAKYWLES 312

Query: 121 IAKIPVNVEIASEYRYRDSVPNPNSLVVTISQSGETADTLAALKHARALGMPHTLTICNV 180
           IAKIPVNVEIASEYRYRDSVPNP SLVVTISQSGETADTLAALKHAR+LGM HTLTICNV
Sbjct: 313 IAKIPVNVEIASEYRYRDSVPNPKSLVVTISQSGETADTLAALKHARSLGMQHTLTICNV 372

Query: 181 ATSAMVRESQLAYITRAGVEVGVASTKAFTTQLAALFLLTLALAQTRGLLSDEQEAEHLK 240
           ATSAMVRE +LAYITRAGVEVGVASTKAFTTQLAALFLLTLALAQTRGLL++EQEAEHLK
Sbjct: 373 ATSAMVRECELAYITRAGVEVGVASTKAFTTQLAALFLLTLALAQTRGLLTEEQEAEHLK 432

Query: 241 AMRHLPAALQSVLALEPNIAAWAEAFARKENALFLGRGLHYPIALEGALKLKEITYIHAE 300
           AMRHLPAALQSVLALEP+I AWAE+FAR+ENALFLGRGLHYPIALEGALKLKEITYIHAE
Sbjct: 433 AMRHLPAALQSVLALEPSIVAWAESFARRENALFLGRGLHYPIALEGALKLKEITYIHAE 492

Query: 301 AYAAGELKHGPLALVTEEMPVVTVAPNDALIEKLKSNMQEVRARGGQLYVFADAGSSIAS 360
           AYAAGELKHGPLALVT++MPVVT+APNDAL+EKLKSNMQEVRARGGQLYVFAD  S I+S
Sbjct: 493 AYAAGELKHGPLALVTDQMPVVTIAPNDALVEKLKSNMQEVRARGGQLYVFADGDSHISS 552

Query: 361 SEGVHVIRLPEHYGLLSPILHVVPLQLLAYHTALARGTDVDKPRNLAKSVTVE 413
           +EG+HVIR+PEHYG+LSPILHVVPLQLL+YHTALARGTDVDKPRNLAKSVTVE
Sbjct: 553 AEGLHVIRMPEHYGVLSPILHVVPLQLLSYHTALARGTDVDKPRNLAKSVTVE 605


>gi|300313838|ref|YP_003777930.1| glucosamine 6-phosphate synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 336

 Score =  109 bits (272), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 86/271 (31%), Positives = 141/271 (52%), Gaps = 29/271 (10%)

Query: 144 NSLVVTISQSGETADTLAALKHARALGMPHTLTICNVATSAMVRESQLAYITRAGVEVGV 203
           ++L + +SQSG++ D +  +++  A G   T+ + N A S +   +Q +    AGVE  V
Sbjct: 84  DALAIAVSQSGQSPDVVEPIRYFHAQGA-TTVALVNQADSPLASAAQWSLPLHAGVESSV 142

Query: 204 ASTKAFTTQLAALFLLTLALAQTRGLLSDEQEAEHLKAMRHLPAALQSVLALEPNIAAWA 263
           A+TK+F   L A  LLT            + +A  L A+  LP AL++  A +     W+
Sbjct: 143 AATKSFIASLVASALLTAHW---------QDDAALLNALAQLPDALRAACACD-----WS 188

Query: 264 EA---FARKENALFLGRGLHYPIALEGALKLKEITYIHAEAYAAGELKHGPLALVTEEMP 320
           +A       +  + +GRG+ +P+ALE ALK KE   I AEA++  E+KHGP+AL+ E  P
Sbjct: 189 DAVQALTPADRIMVVGRGIGFPLALEAALKCKETCAIQAEAFSGAEIKHGPIALIEEGYP 248

Query: 321 VVTVA---PNDALIEKLKSNMQEVRARGGQLYVFADAGSSIASSEGVHVIRLPEHYGLLS 377
           ++  A   P+ A +  L +   E+R RG ++ + A     +     + V   P+    L 
Sbjct: 249 LLMFAIRGPSQAGMLALAA---EMRVRGAKV-LLAAPEDVVERDLTLPVAATPD----LD 300

Query: 378 PILHVVPLQLLAYHTALARGTDVDKPRNLAK 408
           PI+ +    ++A   + ARG D D+PR+L K
Sbjct: 301 PIVAIQAFYVMAAQLSAARGMDADRPRHLNK 331


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.132    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,193,562
Number of extensions: 47256
Number of successful extensions: 184
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 2
Length of query: 413
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 325
Effective length of database: 1,203,190
Effective search space: 391036750
Effective search space used: 391036750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)