BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0070.p
         (452 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313706|ref|YP_003777798.1| UDP-N-acetylglucosamine pyropho...   742   0.0  

>gi|300313706|ref|YP_003777798.1| UDP-N-acetylglucosamine
           pyrophosphorylase [Herbaspirillum seropedicae SmR1]
          Length = 452

 Score =  742 bits (1916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/452 (79%), Positives = 400/452 (88%)

Query: 1   MNIVILAAGMGKRMQSALPKVLHPIAGKPLLRHVVDTAKVLAPTKLCVVYGHGGDAVPSS 60
           MNIVILAAGMGKRMQS+LPKVLHP+AGKPLL HV+DTA+ LAP++LCV+YGHGGDAVP +
Sbjct: 1   MNIVILAAGMGKRMQSSLPKVLHPLAGKPLLGHVIDTARALAPSRLCVIYGHGGDAVPQA 60

Query: 61  FADNTLSFALQEPQLGTGHAVAQALPFIDDNAPTLVLYGDVPLTTPATLQRLLAAAGEDK 120
           FAD  L+FA QEPQLGTGHAV QALP ++D  PTLVLYGDVPLTT A+LQRLLAAAG+DK
Sbjct: 61  FADRDLAFARQEPQLGTGHAVMQALPHLEDGVPTLVLYGDVPLTTAASLQRLLAAAGQDK 120

Query: 121 LAVLTITVADPTGYGRIVREDGKITRIVEQKDASEAERAISEINTGIIAAPTARLRAWLA 180
           L VLT+T+ DPTGYGRIVRE+GKITRIVEQKDAS AERAI+E+NTGII APTARLR WLA
Sbjct: 121 LGVLTVTLDDPTGYGRIVRENGKITRIVEQKDASPAERAITEVNTGIIVAPTARLRDWLA 180

Query: 181 ALSNDNAQGEYYLTDVIAAAVADGVEVVSANPVDITETLGVNSKVQLAELERAYQRRVAN 240
            LSNDNAQGEYYLTDVIAAAVADGV+VVSA P D+ ETLGVNSKVQLAELER +QR +A 
Sbjct: 181 KLSNDNAQGEYYLTDVIAAAVADGVDVVSAQPDDVAETLGVNSKVQLAELERVHQRNIAT 240

Query: 241 TLLEQGVTLLDPARLDVRGTLSCGRDVSIDVNCIFEGKVEIEDGASIGANCVVKDARIGK 300
            LLE GVTL DPAR+DVRGTL CGRDVSIDVNC+FEG V I +GASIG +CV+++A I  
Sbjct: 241 ALLEAGVTLADPARIDVRGTLDCGRDVSIDVNCVFEGCVSIGEGASIGPHCVIRNASIAA 300

Query: 301 GAQIKPFSHIDGAVVGAAAQVGPYARLRPGAELGEEVHIGNFVEVKKSRIAARSKANHLA 360
           GA IK F+HI+ AVVGA AQVGPYARLRPG EL +EVHIGNFVEVK S I   SKANHLA
Sbjct: 301 GASIKAFTHIEDAVVGAGAQVGPYARLRPGTELADEVHIGNFVEVKNSVIGLGSKANHLA 360

Query: 361 YIGDAVIGSGVNVGAGVITCNYDGVNKFETVIEDDAFIGSDSQLVAPVRVGKGATIGAGT 420
           Y+GDA +GS VN+GAGVITCNYDG NKF T IED+AFIGSDSQLVAPV VGKGAT+GAGT
Sbjct: 361 YVGDADVGSKVNIGAGVITCNYDGANKFRTTIEDEAFIGSDSQLVAPVVVGKGATLGAGT 420

Query: 421 TLTKDAPAGQLTLSRAKQLSLPGWTRPVKVKK 452
           TLTKDAPAGQLT+SRAKQLSLPGW RPVK+KK
Sbjct: 421 TLTKDAPAGQLTISRAKQLSLPGWQRPVKIKK 452


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.134    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,453,992
Number of extensions: 65381
Number of successful extensions: 265
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 256
Number of HSP's successfully gapped: 3
Length of query: 452
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 364
Effective length of database: 1,203,190
Effective search space: 437961160
Effective search space used: 437961160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)