BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0052.p
         (359 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313691|ref|YP_003777783.1| CDP-glucose-4,6-dehydratase [He...   591   e-170
gi|300313692|ref|YP_003777784.1| UDP-glucose 4-epimerase [Herbas...    61   1e-10

>gi|300313691|ref|YP_003777783.1| CDP-glucose-4,6-dehydratase
           [Herbaspirillum seropedicae SmR1]
          Length = 357

 Score =  591 bits (1523), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 286/357 (80%), Positives = 315/357 (88%), Gaps = 1/357 (0%)

Query: 3   AQFWRDKRVFITGHTGFKGSWLTLWLHRWGAKVYGYSLPAPTNPSLFHLARLQNCVQTTT 62
           A FWRDKRVFITGHTGFKGSWLTLWLH  GAKV GYSLPAPT+PSLFHLARL NCVQTTT
Sbjct: 2   ANFWRDKRVFITGHTGFKGSWLTLWLHLMGAKVSGYSLPAPTSPSLFHLARLHNCVQTTT 61

Query: 63  GDVRDLRHLSDTMAAVQPDVVFHLAAQPLVRDSYNTPIDTFAINVMGTAHLLEAVRHTPS 122
           GDVRD +HL++TMAAVQPDVVFHLA QP +  SY TP+DTFA NVMGTAHLLEAVR TPS
Sbjct: 62  GDVRDPKHLAETMAAVQPDVVFHLAGQPQIEHSYLTPLDTFATNVMGTAHLLEAVRSTPS 121

Query: 123 VRSVIVVTSDKCYENREWLWGYREDDPMGGHDPYSSSKGAAELVTSAYRRSYFQHNADAH 182
           VR+V+VV+S+KCYENREWLWGYREDDPMGGHDP+SSSKGAAELVT+AYRRS+F  + D+ 
Sbjct: 122 VRAVVVVSSNKCYENREWLWGYREDDPMGGHDPFSSSKGAAELVTAAYRRSFFSADPDSP 181

Query: 183 AAIATVRAGNVIGGGDFAGDRLIPDFIRALEKEEAVSIRNPHAIRPWQFVLEPLSGYLQV 242
             +A+VR GNVIGGGDFA DRLIPDFIRALE ++ V+IR PHA+RPWQFVLEPLSGYLQ+
Sbjct: 182 VGVASVRTGNVIGGGDFAADRLIPDFIRALETDQPVTIRQPHAVRPWQFVLEPLSGYLQI 241

Query: 243 AQKLYESGQQFAEGWNFGPADTDLQTVSQLCATFNHSLQKNDVAPVEVRLESQAGAPHEA 302
            + LYE G  +AE WNFGP DTDLQTVSQLCATFNHSLQKNDV PVEVRLE QAGA    
Sbjct: 242 GKMLYEHGASYAEAWNFGPTDTDLQTVSQLCATFNHSLQKNDVEPVEVRLE-QAGATLSE 300

Query: 303 AFLRLDISKARQRLDWVPKMELYTALELTAQWYGGYINNEDLRTLSESQIEFYQNLT 359
           A LRLD SKARQRLDW+P+MELYTALELTAQWY GY+NNEDLR LSE+QI FYQ+LT
Sbjct: 301 AVLRLDTSKARQRLDWIPRMELYTALELTAQWYAGYLNNEDLRALSENQIAFYQSLT 357


>gi|300313692|ref|YP_003777784.1| UDP-glucose 4-epimerase
           [Herbaspirillum seropedicae SmR1]
          Length = 336

 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 88/189 (46%), Gaps = 14/189 (7%)

Query: 11  VFITGHTGFKGSWLTLWLHRWGAKVYGYSLPAPTNPSLFHLARLQNCVQTT----TGDVR 66
           + +TG  G+ GS   + L + G +V  +     ++P    + R+Q     T     GD+R
Sbjct: 3   ILVTGGAGYIGSHTCVELLKAGHEVIVFDNFCNSSPE--SVKRVQQITGKTLSLVKGDIR 60

Query: 67  DLRHLSDTMAAVQPDVVFHLAAQPLVRDSYNTPIDTFAINVMGTAHLLEAVRHTPSVRSV 126
           +   L   +   + + V H A    V +S   P+  +  NV+GT  LLEA++ T  V+++
Sbjct: 61  NREQLESVLREFKCEAVIHFAGLKAVGESVEQPLMYYDNNVVGTVRLLEAMQAT-GVKTI 119

Query: 127 IVVTSDKCYENREWLWGYREDDPMGGHDPYSSSKGAAELVTSAYRRSYFQHNADAHAAIA 186
           +  +S   Y + ++L    E  P+   +PY  SK    +V     R Y++ + D    IA
Sbjct: 120 VFSSSATVYGDPQYL-PLDEAHPLSASNPYGRSK----IVIEDMLRDYYRAHPDWK--IA 172

Query: 187 TVRAGNVIG 195
            +R  N +G
Sbjct: 173 LLRYFNPVG 181


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,185,219
Number of extensions: 49158
Number of successful extensions: 155
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 2
Length of query: 359
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 273
Effective length of database: 1,212,660
Effective search space: 331056180
Effective search space used: 331056180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)