BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0051.p
         (319 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313690|ref|YP_003777782.1| cell cycle control ATPase [Herb...   355   2e-99

>gi|300313690|ref|YP_003777782.1| cell cycle control ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 320

 Score =  355 bits (912), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 178/323 (55%), Positives = 225/323 (69%), Gaps = 12/323 (3%)

Query: 1   MNDLLEHAKL-----ADSAAPAEAIPSVKQAEKLAYENNK---LHKRLCRLTGQAIGDYN 52
           MND+     L     AD  A A + P+  Q+E  A  + +   L K + RLTG+AI D++
Sbjct: 1   MNDMAAAVPLSDPIQADELAQAGSGPA-GQSEVTAPGSRRFELLQKNIRRLTGRAIADFD 59

Query: 53  MIEDGDKVMVCLSGGKDSYALLDILLTLRERAPIHFDIIAVNLDQKQPNFPADILPAYLE 112
           MI DGD +M C+SGG DSY +LD L  L+  AP+ F+IIAVNLDQKQP FP  ILP Y E
Sbjct: 60  MIRDGDVIMACMSGGADSYTMLDTLRYLQSVAPVKFEIIAVNLDQKQPGFPEHILPEYFE 119

Query: 113 KLGVAYHIENQDTYSIVKRVVPEGKTTCALCSRLRRGILYRVATELGATKIALGHHRDDI 172
           ++GV Y I  +DTYSIVK  +  GKTTC+LCSRLRRGILYRVA ELGATKIALGHHRDDI
Sbjct: 120 RIGVRYRIVEEDTYSIVKDKIAPGKTTCSLCSRLRRGILYRVAKELGATKIALGHHRDDI 179

Query: 173 LETFFLNMFFGGKLKGMPPKLQSDDGKQIVIRPLAYVKEADLTRYAEVKEFPIIPCDLCG 232
           L TF LNMF+GGK+K MPPKL +DDG+ +VIRPLAYV+E D+ +YA   +FPIIPC+LCG
Sbjct: 180 LHTFMLNMFYGGKIKTMPPKLIADDGENVVIRPLAYVREPDIKKYAAAMQFPIIPCNLCG 239

Query: 233 SQENLQRKQIKGLMREWEKKFPGRVDNIFASFSTVAPSHLMDRKLFDFANLKATGEADAN 292
           SQ NLQR+ ++ ++ EWEK  P  + ++F +   +APSH++DR LFDF +       +A+
Sbjct: 240 SQPNLQRQAMREMLNEWEKTNPLWIKSMFTAMGNIAPSHMLDRSLFDFTHFTPGPGKEAS 299

Query: 293 GDIAFDEDPCATGAPAGQNVIKL 315
           GD  FD D        GQ+VI L
Sbjct: 300 GDTLFDRD---DKVEDGQSVINL 319


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.138    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,013,223
Number of extensions: 42151
Number of successful extensions: 104
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 234
Effective length of database: 1,217,395
Effective search space: 284870430
Effective search space used: 284870430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)