BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0050.p
         (131 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313683|ref|YP_003777775.1| dihydroneopterin aldolase [Herb...   231   2e-62

>gi|300313683|ref|YP_003777775.1| dihydroneopterin aldolase
           [Herbaspirillum seropedicae SmR1]
          Length = 131

 Score =  231 bits (589), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 109/128 (85%), Positives = 116/128 (90%)

Query: 1   MFSLSHPELNDCRRLFLRNYEVLINIGVHEFEKKGEQRILINVDLFIPLAMSTPEHDQLQ 60
           M  LSHP L DCRRLFLRNYEV INIGVHEFEKKGEQRILINVDL++PLA +TP  D L 
Sbjct: 1   MLFLSHPSLQDCRRLFLRNYEVFINIGVHEFEKKGEQRILINVDLYVPLAETTPTADHLD 60

Query: 61  EVVDYDFIRSTIAKRMAQGHIHLQETLCDDVVKAMLAHPKVRAVRVSTEKPDVYPDCDSV 120
           EVVDYDFIRSTIA+RMA+GHIHLQETLCDDV+ AMLAHPKVRAVRVSTEKPDVYPDCDSV
Sbjct: 61  EVVDYDFIRSTIAQRMARGHIHLQETLCDDVMTAMLAHPKVRAVRVSTEKPDVYPDCDSV 120

Query: 121 GVEVFRVK 128
           GVE FR+K
Sbjct: 121 GVETFRIK 128


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.139    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 356,956
Number of extensions: 11742
Number of successful extensions: 40
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 1
Length of query: 131
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 56
Effective length of database: 1,264,745
Effective search space: 70825720
Effective search space used: 70825720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 125 (52.8 bits)