BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0048.p
         (385 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313681|ref|YP_003777773.1| hypothetical protein Hsero_4398...   524   e-150

>gi|300313681|ref|YP_003777773.1| hypothetical protein Hsero_4398
           [Herbaspirillum seropedicae SmR1]
          Length = 394

 Score =  524 bits (1349), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 268/390 (68%), Positives = 303/390 (77%), Gaps = 9/390 (2%)

Query: 1   MQLQLPEPSADALAASRSLQLLIADDIRRNGGWISFARYMELVLYAPALGYYSGGAAKLG 60
           MQLQLPEP  DA AAS +LQ  IA +I   GGWISF RYMEL LYAP +GYYSGG+AKLG
Sbjct: 9   MQLQLPEPGEDAQAASHTLQHQIAGEIAAAGGWISFQRYMELALYAPQVGYYSGGSAKLG 68

Query: 61  KDGDFTTAPEISPLFGATLAHLATELF---PQTGAAIMEFGAGTGKLAFDILSELRAAGK 117
           K+GDFTTAPEISPL+GATLA LA E+    P     ++EFGAGTGKLA DIL+EL+A   
Sbjct: 69  KEGDFTTAPEISPLYGATLASLAAEVIAASPSVDNVLLEFGAGTGKLAHDILTELQARAA 128

Query: 118 LPEHYYIVEISSQLRARQQEKLRDF-PQVQWLDSLPATFSGVVIGNEVLDAMPVQLVVRS 176
           LP+ Y+IVEIS+QLRARQQ+ L  F P VQWLD+LPATFSGVV+GNEVLDAMPV+L V++
Sbjct: 129 LPQRYFIVEISAQLRARQQQTLAAFAPLVQWLDALPATFSGVVVGNEVLDAMPVRLAVKA 188

Query: 177 EQGWLERGVALDDAGAFTFADRADRADAAAILAAQIPDGDALPVGYLTEVHPIGAAFMQS 236
           EQGW ERGVALD  G   F DR+       +  AQIPD   LP GYLTEV P+   FM +
Sbjct: 189 EQGWQERGVALDAEGRLRFEDRS----VDDLPLAQIPDAHELPPGYLTEVAPVAIGFMHT 244

Query: 237 LAAMLQRGNSA-ALLIDYGFPAAEYYFPGRAQGTLMCHYRHHAHADPFYLPGLQDVTAHV 295
           L  ML  G  A A+L DYGFPAAEYY   R QGTLMCHYRHHAH DPFY PGLQD+TAHV
Sbjct: 245 LGRMLASGPGALAILPDYGFPAAEYYLHDRDQGTLMCHYRHHAHTDPFYWPGLQDITAHV 304

Query: 296 DFTAMARAAIEGGLDVLGYASQAGFLLSAGIGELLLRTSPEQSAQYLPQSNAVQKLISPA 355
           DFTAMA AA+E G +VL Y SQ  FLL+AGIGELLLRTSPE SA+YLP +N +QKLISPA
Sbjct: 305 DFTAMAVAAVEEGAEVLAYTSQGAFLLNAGIGELLLRTSPEDSARYLPLANGMQKLISPA 364

Query: 356 EMGELFKVLVVGKNVDWPGRLLTHDRTHRL 385
           EMGELFKVL +GKNV+WP R+L HDRTHRL
Sbjct: 365 EMGELFKVLAIGKNVEWPQRMLRHDRTHRL 394


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,268,628
Number of extensions: 54592
Number of successful extensions: 150
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 298
Effective length of database: 1,207,925
Effective search space: 359961650
Effective search space used: 359961650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)