BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0046.p (191 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313680|ref|YP_003777772.1| two component response regulato... 191 3e-50 gi|300309981|ref|YP_003774073.1| two component response regulato... 117 5e-28 gi|300313818|ref|YP_003777910.1| two component transcription reg... 116 1e-27 gi|300309361|ref|YP_003773453.1| response regulator for cobalt/z... 110 6e-26 gi|300311750|ref|YP_003775842.1| transcription response regulato... 110 8e-26 >gi|300313680|ref|YP_003777772.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 218 Score = 191 bits (486), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 95/114 (83%), Positives = 105/114 (92%) Query: 1 MRILLVEDDLMVGEAARKGLRQDGFAVDWVQDGAAAALALRQEDYALVLLDLGLPQKNGL 60 MR+LLVEDD MVGEA RKGLRQDGFA+DWVQDG +A +ALR EDYA++LLDLGLPQK+GL Sbjct: 1 MRVLLVEDDPMVGEAVRKGLRQDGFAIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 Query: 61 AVLQELRAAGNKVPVLITTARDAVADRVAGLDAGADDYLIKPYDLEELSARMRA 114 AVL+ LR GN +PVLITTARDAVADRVAGLDAGADDYLIKP+DLEELSARMRA Sbjct: 61 AVLRTLRERGNAIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRA 114 >gi|300309981|ref|YP_003774073.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 237 Score = 117 bits (294), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 64/131 (48%), Positives = 87/131 (66%), Gaps = 7/131 (5%) Query: 1 MRILLVEDDLMVGEAARKGLRQDGFAVDWVQDGAAAALALRQEDYALVLLDLGLPQKNGL 60 MRILL EDD ++ + + LR G+A D V++G A AL +D+ L++LDLGLP+ +GL Sbjct: 1 MRILLAEDDSVLADGLTRSLRHSGYAADCVKNGVEADSALSTQDFDLLILDLGLPKMSGL 60 Query: 61 AVLQELRAAGNKVPVLITTARDAVADRVAGLDAGADDYLIKPYDLEELSARMRAXPILDL 120 VL+ LRA +++PVLI TA D+V RV GLD GADDY+ KP+ L EL AR+RA Sbjct: 61 EVLRRLRARNSRLPVLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRAL----- 115 Query: 121 LESRAASPGGP 131 +R + GGP Sbjct: 116 --TRRGAGGGP 124 >gi|300313818|ref|YP_003777910.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 224 Score = 116 bits (290), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 60/114 (52%), Positives = 80/114 (70%) Query: 1 MRILLVEDDLMVGEAARKGLRQDGFAVDWVQDGAAAALALRQEDYALVLLDLGLPQKNGL 60 MRILLVED + + K +R V+ +GA A L +DYALV+LDL LP+ +G+ Sbjct: 1 MRILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGM 60 Query: 61 AVLQELRAAGNKVPVLITTARDAVADRVAGLDAGADDYLIKPYDLEELSARMRA 114 VL+ +RA GN+ PVLI TAR +ADRV+GL+ GADDYL KP++LEEL AR++A Sbjct: 61 EVLKRMRARGNRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKA 114 >gi|300309361|ref|YP_003773453.1| response regulator for cobalt/zinc/cadmium resistance transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 235 Score = 110 bits (276), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 59/114 (51%), Positives = 73/114 (64%), Gaps = 1/114 (0%) Query: 1 MRILLVEDDLMVGEAARKGLRQDGFAVDWVQDGAAAALALRQEDYALVLLDLGLPQKNGL 60 M ILLVED+ G+ R+GL + GF VDWVQ G R DY L++LD+ LP NG Sbjct: 1 MHILLVEDEPKSGDYLRRGLTESGFVVDWVQTGVDGLHNARTLDYKLIILDVMLPGMNGW 60 Query: 61 AVLQELRAAGNKVPVLITTARDAVADRVAGLDAGADDYLIKPYDLEELSARMRA 114 +L+ELR + PVL TARD V DRV GL+ GADDYL+KP+ EL AR+R Sbjct: 61 DILRELRRT-HDTPVLFLTARDEVEDRVKGLELGADDYLVKPFAYTELLARVRT 113 >gi|300311750|ref|YP_003775842.1| transcription response regulator protein [Herbaspirillum seropedicae SmR1] Length = 220 Score = 110 bits (275), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 63/107 (58%), Positives = 81/107 (75%), Gaps = 1/107 (0%) Query: 1 MRILLVEDDLMVGEAARKGLRQDGFAVDWVQDGAAAALALRQEDYALVLLDLGLPQKNGL 60 MRILLVEDD M+GE R L+ +G+A DWV+ G AA LAL Q+ Y +LLDLGLP +GL Sbjct: 1 MRILLVEDDAMIGEEVRCALKDNGYAADWVRAGDAALLALAQQQYDALLLDLGLPGADGL 60 Query: 61 AVLQELRAAGNKVPVLITTARDAVADRVAGLDAGADDYLIKPYDLEE 107 AVL++LR + +PVL+ TARD + DR+ GLDAGADDYL+KP+ + E Sbjct: 61 AVLRQLRTH-SLLPVLVITARDGIQDRIGGLDAGADDYLLKPFAIGE 106 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.137 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 682,761 Number of extensions: 31358 Number of successful extensions: 247 Number of sequences better than 1.0e-08: 35 Number of HSP's gapped: 242 Number of HSP's successfully gapped: 35 Length of query: 191 Length of database: 1,619,870 Length adjustment: 80 Effective length of query: 111 Effective length of database: 1,241,070 Effective search space: 137758770 Effective search space used: 137758770 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)