BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0036.p
         (575 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310930|ref|YP_003775022.1| multicopper oxidase [Herbaspiri...   110   4e-25

>gi|300310930|ref|YP_003775022.1| multicopper oxidase
           [Herbaspirillum seropedicae SmR1]
          Length = 462

 Score =  110 bits (274), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 86/248 (34%), Positives = 118/248 (47%), Gaps = 26/248 (10%)

Query: 4   PARG-PAAPILTGNVFDL------------VVAESVVN--FTGKQTTATTINGSLPAPTL 48
           PA G P  P++T N + L            +VAE VV     G +      NG  P PT+
Sbjct: 49  PANGRPYQPVVTLNGWSLPWRMNNGVKEFHLVAEPVVREIAPGMKARLWGYNGQSPGPTI 108

Query: 49  RWKEGEMVTINVTNKLREHTSIHWHGIILPFRMDGVPGISFAGIAPGETFTYQFKVKQSG 108
              EG+ V I VTNKL E TS+HWHG  LP  MDGV G++   I PG+T+ Y+F  +++G
Sbjct: 109 EVVEGDRVRIFVTNKLPEATSVHWHGQRLPNGMDGVSGLTQPAIPPGKTYVYEFTARRAG 168

Query: 109 TYWYHSHSG--MQEQTGMYGAIVIEPIDSGKKMVDREHVVLFSDWMDENPMSVLSKLKKQ 166
           T+ YH H+   +Q   GM G  V  P D G   VDR+ V L + + D  P + + K+   
Sbjct: 169 TFMYHPHADEMVQMAMGMMGFWVTHPKDPGFMRVDRDFVFLMNAY-DIAPGASVPKVSTM 227

Query: 167 GDF----YNLNRLTAGDFVRDARKDGVKAALGNRAMWNEMRMNPTDLGDLSAAVLTYLAN 222
            DF    +N       D +   + D V+  +GN  M N    +P  L     +V      
Sbjct: 228 LDFNLWTWNSRAFPGIDPLVVRQNDRVRIRVGNLTMTN----HPLHLHGHEFSVTGTDGG 283

Query: 223 GVTPAGNW 230
            V PA  W
Sbjct: 284 WVPPAARW 291


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,846,757
Number of extensions: 79621
Number of successful extensions: 222
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 221
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 485
Effective length of database: 1,193,720
Effective search space: 578954200
Effective search space used: 578954200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)