BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0030.p
         (340 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313675|ref|YP_003777767.1| glutamine amidotransferase [Her...   539   e-154

>gi|300313675|ref|YP_003777767.1| glutamine amidotransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 378

 Score =  539 bits (1388), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 278/382 (72%), Positives = 295/382 (77%), Gaps = 46/382 (12%)

Query: 1   MSDISDSEANQPSSPRPPRPDAPAASTSAQAP---------------------------- 32
           MSDI DSEAN P    P RP  PA   SA A                             
Sbjct: 1   MSDIQDSEANLP----PDRPSTPAQPVSADASGTPAASQTPAPAAAAPAAPAPVAAAAPP 56

Query: 33  ---------TAAQQQAQQAAQQAPHPAYS--PPPL---DTPWAQTWRLLGARFKAMSDKA 78
                     +A     Q AQQ+ H  YS  PPP    D PWAQTWR L AR + +SDKA
Sbjct: 57  AVPPAQPSPESAPAGQAQQAQQSAHSPYSAVPPPHHAGDAPWAQTWRFLTARLRQLSDKA 116

Query: 79  GRRIMQRTLKIGISARIFHPETGAKGLRGKTLQYLEESIAQWVMSRDVLVFMIPTVNTNG 138
           GRR+MQRTLKIG+SARIFHPE GAKGLR KTLQYLEESIAQWVMSRDVLVFMIPTVNTNG
Sbjct: 117 GRRVMQRTLKIGVSARIFHPEAGAKGLRSKTLQYLEESIAQWVMSRDVLVFMIPTVNTNG 176

Query: 139 LVHPSNIRLRDYAKHLDGLVLQGGADVSPQSYAEAATRPEWNGDRVRDMYELELLHEFIE 198
           LVHPSNIRLRDYAKHLDGLVLQGGADVSPQSYA++ATRPEW+GDRVRDMYELELLHEFIE
Sbjct: 177 LVHPSNIRLRDYAKHLDGLVLQGGADVSPQSYAQSATRPEWSGDRVRDMYELELLHEFIE 236

Query: 199 AGKPVLGICRGCQLINVAFGGSLYQDIATDVPAAIAHVNDLYDSNYHELKFPPGSTLASL 258
           AGKPVLGICRGCQLINVAFGG+LYQDIATDVP AI HVN+ YDSNYH L FP GS+LA+L
Sbjct: 237 AGKPVLGICRGCQLINVAFGGTLYQDIATDVPTAIPHVNEQYDSNYHTLHFPQGSSLANL 296

Query: 259 VNTQNAVVNSIHHQAVKDLGRDLSVEAVSGTDNIVEAIRYRKAPFVMGLQWHPEFHRAGG 318
           +  +NAVVNSIHHQAV+DLGRDLSVEAVSG D IVEAIRYRKAPFVMGLQWHPEFHRAG 
Sbjct: 297 LKAENAVVNSIHHQAVRDLGRDLSVEAVSGPDQIVEAIRYRKAPFVMGLQWHPEFHRAGS 356

Query: 319 PELLDCMPILDSFLRTARETRF 340
           PELLDC P+LDSFLR ARETRF
Sbjct: 357 PELLDCTPVLDSFLRAARETRF 378


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 970,778
Number of extensions: 40577
Number of successful extensions: 107
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 254
Effective length of database: 1,212,660
Effective search space: 308015640
Effective search space used: 308015640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)