BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0009.p
         (79 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310590|ref|YP_003774682.1| phosphate ABC transporter ATPas...    64   3e-12
gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPa...    57   3e-10
gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbasp...    56   5e-10
gi|300312808|ref|YP_003776900.1| glutamine ABC transporter ATPas...    56   5e-10
gi|300313887|ref|YP_003777979.1| amino acid ABC transporter ATPa...    55   1e-09

>gi|300310590|ref|YP_003774682.1| phosphate ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 272

 Score = 63.5 bits (153), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 48/69 (69%), Gaps = 1/69 (1%)

Query: 1   LSTGERQRLALIRSLLIRPKVLLLDEPTGALDQVNTAAVEAVLRDSLHAGLALVLVTHSA 60
           LS G++QRL + R + ++P+VLLLDEPT ALD ++TA VE ++ + L     + +VTH+ 
Sbjct: 169 LSGGQQQRLCIARGVAVKPEVLLLDEPTSALDPISTAKVEELIGE-LKNDYTIAIVTHNM 227

Query: 61  EQAERLGNH 69
           +QA R  ++
Sbjct: 228 QQAARCSDY 236


>gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 244

 Score = 57.0 bits (136), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 44/68 (64%)

Query: 1   LSTGERQRLALIRSLLIRPKVLLLDEPTGALDQVNTAAVEAVLRDSLHAGLALVLVTHSA 60
           LS G++QR+A+ RSL + P+V+L DE T ALD   TA V  V+ +    G+ ++LVTH  
Sbjct: 139 LSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELTAEVLKVMEELARGGMTMLLVTHEM 198

Query: 61  EQAERLGN 68
           E A R+ +
Sbjct: 199 EFARRVAD 206


>gi|300312621|ref|YP_003776713.1| ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 257

 Score = 56.2 bits (134), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 46/79 (58%), Gaps = 1/79 (1%)

Query: 1   LSTGERQRLALIRSLLIRPKVLLLDEPTGALDQVNTAAVEAVLRDSL-HAGLALVLVTHS 59
           +S G RQR AL R+ + +PK LLLDEP GALD +    ++  LRD +   G  +VLVTH 
Sbjct: 130 VSGGMRQRAALARAFISQPKALLLDEPFGALDALTRMTLQDALRDLIRQQGPTVVLVTHD 189

Query: 60  AEQAERLGNHRLEITRRKA 78
            ++A  L +     + R A
Sbjct: 190 VDEALFLADRIFVFSPRPA 208


>gi|300312808|ref|YP_003776900.1| glutamine ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 240

 Score = 56.2 bits (134), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 43/67 (64%)

Query: 1   LSTGERQRLALIRSLLIRPKVLLLDEPTGALDQVNTAAVEAVLRDSLHAGLALVLVTHSA 60
           LS G++QR+A+ R+L +RPK++L DEPT ALD      V  V++     G+ +++VTH  
Sbjct: 137 LSGGQQQRVAIARALAVRPKLMLFDEPTSALDPELRQEVLRVMQSLAEEGMTMIVVTHEI 196

Query: 61  EQAERLG 67
             A R+G
Sbjct: 197 SFARRVG 203


>gi|300313887|ref|YP_003777979.1| amino acid ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 264

 Score = 55.1 bits (131), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 43/68 (63%)

Query: 1   LSTGERQRLALIRSLLIRPKVLLLDEPTGALDQVNTAAVEAVLRDSLHAGLALVLVTHSA 60
           LS G++QR+A+ RSL + PKV+L DE T ALD   T  V  V+ D    G+ ++LVTH  
Sbjct: 162 LSGGQQQRVAIARSLAMAPKVMLFDEVTSALDPQLTGEVLRVMEDLAANGMTMLLVTHEM 221

Query: 61  EQAERLGN 68
             A+R+ +
Sbjct: 222 NFAKRVAD 229


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 220,420
Number of extensions: 7315
Number of successful extensions: 190
Number of sequences better than 1.0e-08: 17
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 17
Length of query: 79
Length of database: 1,619,870
Length adjustment: 50
Effective length of query: 29
Effective length of database: 1,383,120
Effective search space: 40110480
Effective search space used: 40110480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 123 (52.0 bits)