BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0001.p
         (693 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312347|ref|YP_003776439.1| hemagglutinin/hemolysin-related...    77   5e-15

>gi|300312347|ref|YP_003776439.1| hemagglutinin/hemolysin-related
            protein [Herbaspirillum seropedicae SmR1]
          Length = 3215

 Score = 77.0 bits (188), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 113/381 (29%), Positives = 156/381 (40%), Gaps = 83/381 (21%)

Query: 11   TRQAVYVSGSGTGAL-LFRYTVVNGDADADGITI--GALSLNSGS-IKDTAGNNAVTTLN 66
            TR A Y + S  G    F Y +   D   DGI+I   AL L +G+ I D AGN A    +
Sbjct: 1720 TRSASYKTLSTDGKTAYFDYVLTAADTATDGISIPANALQLPTGARITDLAGNAAKVDSS 1779

Query: 67   AVGATTGVNVDGSQPSITNVSAS--TSD---GAYGTGQTVTITVDFSSAVNVDTTGGTPT 121
             V       VD S P++T V  S  T+D   G Y  G  +T+   FS  V+++TTGG P 
Sbjct: 1780 VVALNPAYKVDNSAPTLTEVKVSEMTADNGSGIYKAGSVITVQAKFSEPVDINTTGGAPR 1839

Query: 122  LALNGGG---SATYTG---GSGGTTLSFTYVVGAGQNSADLDVSSTSALSLNGATIIEA- 174
            + L  GG   +A Y     G     L F+Y V +G N+        S L LNGA+I +  
Sbjct: 1840 IKLTIGGDERTAAYVDRVPGDAPDVLKFSYTVLSGDNAPAGVAIPASPLVLNGASITDVS 1899

Query: 175  --------GGAHQNASVTL-----------LTPGAVSGTLASNLTAGQTVSG-------- 207
                    GG   NAS  +           +   +VSGT   N  AG  ++         
Sbjct: 1900 GNRAVLTLGGVQPNASFKIDTTAPTVTAVAIESASVSGT-EGNYRAGDVITAVVTFSEEV 1958

Query: 208  TLASNLTAGEHVYVSLDN-----------------GGSWNLAATTVGTKGWSLAGVTLTG 250
             LA N  A  ++ V  D+                   S+ L +    + G S+A  +L  
Sbjct: 1959 KLAPNAQASLNLMVGGDSRTATLVTPTANAASNTLRFSYTLQSADADSNGISIAPNSLAL 2018

Query: 251  SGTLKVRVSDDAGNQGTAYTQS------YVLDTTAPTI-SFS----------GIALSADX 293
            +G     V+D AGN       +      + +D  APTI SFS          G  ++   
Sbjct: 2019 AG-----VTDKAGNAAAPAHVAVADNPLFKVDNAAPTILSFSTTTPDGTYNIGKVINLRA 2073

Query: 294  TLSANLAAGETVQVSLDNGAT 314
            T S  L  G  + V+LDNG T
Sbjct: 2074 TASEELRPGAKITVTLDNGDT 2094


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.309    0.126    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,976,217
Number of extensions: 81955
Number of successful extensions: 363
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 349
Number of HSP's successfully gapped: 12
Length of query: 693
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 601
Effective length of database: 1,184,250
Effective search space: 711734250
Effective search space used: 711734250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 134 (56.2 bits)