BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0092.p (292 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312509|ref|YP_003776601.1| arabinose efflux permease [Herb... 440 e-125 gi|300312245|ref|YP_003776337.1| transmembrane efflux transmembr... 237 9e-64 gi|300313915|ref|YP_003778007.1| transmembrane arabinose efflux ... 83 3e-17 gi|300310405|ref|YP_003774497.1| arabinose efflux permease [Herb... 64 2e-11 >gi|300312509|ref|YP_003776601.1| arabinose efflux permease [Herbaspirillum seropedicae SmR1] Length = 385 Score = 440 bits (1132), Expect = e-125, Method: Compositional matrix adjust. Identities = 223/286 (77%), Positives = 251/286 (87%) Query: 1 MVARVVTAFCHAAFFGIGSVVAAELVPREKRAQAVALMFTGLTVANILGVPFGTALGHAA 60 MVARVVTAFCHAAFFGIGSVVAAELV +KRAQAVALMFTGLTVANILGVP GTA GHAA Sbjct: 95 MVARVVTAFCHAAFFGIGSVVAAELVAPQKRAQAVALMFTGLTVANILGVPLGTAFGHAA 154 Query: 61 GWRSTFGAITVIGLAAVIMLWICLPKKIAMQGGSIFKEFRAIVHPQVQLALLTSTLASVS 120 GWRSTFGA+T IG+ A IMLW LPKKI MQ G+IF+EFR+I+ +VQL+LLTSTLAS+S Sbjct: 155 GWRSTFGAVTAIGVLAAIMLWTMLPKKIPMQAGNIFQEFRSIIDTRVQLSLLTSTLASIS 214 Query: 121 MFSVLTYIAYILLDVTGFTAHQESWVLLLFGAGITVGGLIGGRLADWRLMPVLFSMFVCI 180 MFSV+TYIAYILLDVTGFT QESWVLLLFGAGITVGGL+GG+LADW+LMPV+ +F+CI Sbjct: 215 MFSVITYIAYILLDVTGFTTQQESWVLLLFGAGITVGGLVGGKLADWKLMPVMCGVFLCI 274 Query: 181 ALILVQFSWSSRYPLPTLITMFIWGAFSFAVVPAAQIRVLDKAKDAPNLASTLNQGAFNV 240 A++L FS +S Y PTL TMF WGAF+FAVVP AQIRVLD A+ APNLASTLNQGAFN+ Sbjct: 275 AVVLGLFSITSHYKWPTLATMFAWGAFAFAVVPGAQIRVLDTARGAPNLASTLNQGAFNL 334 Query: 241 GNATGAWLGGLAISAGLPLTDLPLLGAGVSVLGFLTVLTSALLDRR 286 GNATGAW+GGLAISAGLPLTDLPL+GA ++LG TV SA LD+R Sbjct: 335 GNATGAWVGGLAISAGLPLTDLPLIGAFFALLGLATVAFSASLDKR 380 >gi|300312245|ref|YP_003776337.1| transmembrane efflux transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 395 Score = 237 bits (604), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 137/284 (48%), Positives = 184/284 (64%) Query: 1 MVARVVTAFCHAAFFGIGSVVAAELVPREKRAQAVALMFTGLTVANILGVPFGTALGHAA 60 M+ RVV +F H AFFG+GSVVA LVP+EK+A A+ALMFTGLTVAN+LGVPFGT LG + Sbjct: 95 MIGRVVASFAHGAFFGVGSVVATSLVPKEKQASAIALMFTGLTVANVLGVPFGTWLGQSY 154 Query: 61 GWRSTFGAITVIGLAAVIMLWICLPKKIAMQGGSIFKEFRAIVHPQVQLALLTSTLASVS 120 GWR+TF A+TVIG+ A+ + +P+ + KE R ++ PQV L LL + L Sbjct: 155 GWRATFWAVTVIGVIALAATAVLVPRSQGGEETDFGKEVRVLMRPQVMLGLLMTVLGFGG 214 Query: 121 MFSVLTYIAYILLDVTGFTAHQESWVLLLFGAGITVGGLIGGRLADWRLMPVLFSMFVCI 180 +F+ TYIA IL D++GF A S +LLLFG G+ +G L GG+LAD +LM L V + Sbjct: 215 VFAAFTYIAPILTDLSGFPASAVSPILLLFGLGLVIGNLAGGKLADKKLMATLLGSLVLL 274 Query: 181 ALILVQFSWSSRYPLPTLITMFIWGAFSFAVVPAAQIRVLDKAKDAPNLASTLNQGAFNV 240 A +LV F + + +I + + G +FA VP Q+RVL+KA APNLAS+ N AFN+ Sbjct: 275 AAVLVLFGLTVDNKVAAIIGVGLMGMAAFATVPPLQMRVLEKATGAPNLASSANIAAFNL 334 Query: 241 GNATGAWLGGLAISAGLPLTDLPLLGAGVSVLGFLTVLTSALLD 284 GNA GAWLGG+ I G L +P + A + + G + L S +D Sbjct: 335 GNAAGAWLGGVTIDHGPGLHAVPYVAALLPLAGIVVALVSWKMD 378 >gi|300313915|ref|YP_003778007.1| transmembrane arabinose efflux transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 403 Score = 82.8 bits (203), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 76/267 (28%), Positives = 131/267 (49%), Gaps = 29/267 (10%) Query: 1 MVARVVTAFCHAAFFGIGSVVAAELVPREKRAQAVALMFTGLTVANILGVPFGTALGHAA 60 +VAR++ A + S +A +V +R +A+A++ G+T + LG+P G +GHA Sbjct: 116 LVARLLMAVAAGLYTPNASALAGAMVAPGQRGRALAIVSGGMTSPSALGLPLGAVVGHAF 175 Query: 61 GWRSTFGAITVIGLAAVIMLWICLPKKIA--MQGGSIFKEFRAIVHPQVQLALLTSTLAS 118 GWR+TF A++ +G A+ + + +P++ + + + I PQVQ L + L S Sbjct: 176 GWRATFLAVSAMGAVALAGILLGVPRQAGAHLHVAGLRERMAVIGQPQVQRLLAVTLLWS 235 Query: 119 VSMFSVLTYIAYILLDVTGFTAHQESWVLLLFGA----GITVGGLIGGRLADWRLMPVLF 174 V ++ YIA L V F + S + L+GA G++VGG + R R+ Sbjct: 236 VGAYAAYPYIAPYLSHVLSFGESRISLTVSLWGAAAAVGVSVGGTLNDRYGSARV----- 290 Query: 175 SMFVCIALILVQFSW-------SSRYPL---PTLITMFIWGAFSFAVVPAAQIRVLDKAK 224 V ++L+L+ S+ + PL P L+ + +WG +A PA R++ Sbjct: 291 ---VRVSLLLLMLSFWTLAAATALPPPLALGPVLLAVVVWGFSVWAFFPAQMARLIGAGA 347 Query: 225 DAP-NLASTLNQG----AFNVGNATGA 246 A +A +LN F++G+A GA Sbjct: 348 PAQAPVALSLNTSTLYLGFSLGSAAGA 374 >gi|300310405|ref|YP_003774497.1| arabinose efflux permease [Herbaspirillum seropedicae SmR1] Length = 422 Score = 63.5 bits (153), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 75/255 (29%), Positives = 120/255 (47%), Gaps = 2/255 (0%) Query: 1 MVARVVTAFCHAAFFGIGSVVAAELVPREKRAQAVALMFTGLTVANILGVPFGTALGHAA 60 +VARV+ F+ + + +A LVP A+A++L+ TG++VA + P G +G+ Sbjct: 129 LVARVLLGVALGGFWSMAAALAMRLVPDHLFARAMSLILTGVSVATVCAAPIGAYMGNLW 188 Query: 61 GWRSTFGAITVIGLAAVIMLWICLPKKIAMQGGSIFKEFRAIVHPQVQLALLTSTLASVS 120 GWRS F A V+ L A+ + WI +P+ S+ + V++ALL L Sbjct: 189 GWRSAFVAAGVVSLVAIAIQWIAIPRLPPKDHPSLKVLAELLGRKDVRVALLAVLLVVSG 248 Query: 121 MFSVLTYIAYILLDVTGFTAHQESWVLLLFGAGITVGGLIGGRLADWRLMPVLFSMFVCI 180 F+ TYI ++ +T + S VLL +G G G GG +A+ + S I Sbjct: 249 HFAGFTYIRPLMEQITHMSVTTISAVLLGYGVGGFFGNFAGGFIAERSERYAIVSGGALI 308 Query: 181 ALILVQFSWSSRYPLPTLITMFIWGAFSFAVVPAA-QIRVLDKAKDAPNLASTLNQGAFN 239 AL+ + P+ + + +WG F+F P Q ++ A D A L AF Sbjct: 309 ALLAASLWVAGSSPVVAAVAITLWG-FAFGAFPVGFQTWIVRAAPDHAEGAGGLLVAAFQ 367 Query: 240 VGNATGAWLGGLAIS 254 V A+GA GG+ + Sbjct: 368 VAIASGAIGGGVLVD 382 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.328 0.140 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 833,954 Number of extensions: 32596 Number of successful extensions: 254 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 253 Number of HSP's successfully gapped: 5 Length of query: 292 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 208 Effective length of database: 1,222,130 Effective search space: 254203040 Effective search space used: 254203040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)