BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0088.p
         (269 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310364|ref|YP_003774456.1| 2-keto-3-deoxygalactonate kinas...   301   5e-83

>gi|300310364|ref|YP_003774456.1| 2-keto-3-deoxygalactonate kinase
           [Herbaspirillum seropedicae SmR1]
          Length = 319

 Score =  301 bits (770), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 159/246 (64%), Positives = 182/246 (73%), Gaps = 11/246 (4%)

Query: 13  LIALDWGTTSLRAYRFDADGRVADRRALPWGVMNLPPAEDGAGASANSANSADAGFRRAL 72
           LIALDWGT+SLR YR+D  G+V +RRA PWG+MNLP  E G        + A A +R AL
Sbjct: 10  LIALDWGTSSLRCYRYDGSGQVVERRAHPWGIMNLPAVEHG--------DDAQAPYRAAL 61

Query: 73  QAACGDWLRDSPATPLIAAGMVGSKQGWREAPYLDVPLAVSEVGNTMTIVDTGFGVPLHI 132
           +AACGDW+  +P   LIAAGMVGSKQGWREA YL VPLA   +G  +T VDTG G  L I
Sbjct: 62  EAACGDWIAAAPEAALIAAGMVGSKQGWREAAYLTVPLAPDGIGRKLTEVDTGLGRSLWI 121

Query: 133 VPGLLQRSALPNVMRGEETQVAGILDQLQVDDILIGLPGTHSKWVHVRGKRIEHFDTFMT 192
           +PGLLQ SALPNVMRGEETQV G L Q +  ++LIGLPGTHSKWV V   RIEHFDTFMT
Sbjct: 122 IPGLLQNSALPNVMRGEETQVIGALQQQRQSELLIGLPGTHSKWVRVVEGRIEHFDTFMT 181

Query: 193 GEMYAVLSNHSILGRTMQRDGAVDATDDAAFVRGALVAKSSDGRAGMLSNIFSSRTLGLT 252
           GE+Y  L  H+ILGRTM +    D  DDAAFVRGA VA+   G+AG+LSNIFSSRTLGLT
Sbjct: 182 GEVYGALCGHTILGRTMHKP---DVPDDAAFVRGARVAQGPQGQAGVLSNIFSSRTLGLT 238

Query: 253 GELSPR 258
           GEL+P 
Sbjct: 239 GELAPE 244


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 870,081
Number of extensions: 36597
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 185
Effective length of database: 1,222,130
Effective search space: 226094050
Effective search space used: 226094050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)