BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0080.p (448 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310371|ref|YP_003774463.1| sugar ABC transporter ATPase [H... 734 0.0 gi|300313777|ref|YP_003777869.1| D-xylose ABC transporter ATPase... 385 e-108 gi|300310382|ref|YP_003774474.1| sugar ABC transporter ATPase [H... 311 5e-86 gi|300310063|ref|YP_003774155.1| sugar ABC transporter ATPase [H... 285 5e-78 gi|300313728|ref|YP_003777820.1| sugar ABC transporter ATPase [H... 278 5e-76 >gi|300310371|ref|YP_003774463.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 518 Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/432 (84%), Positives = 400/432 (92%) Query: 1 MSTILEMRGIEKTFPGVKALNNVNLAVRTGEIHAVVGENGAGKSTLMKVLSGVYPHGSYS 60 MS ILEMRGIEK+FPGVKALNNVNLAVR GEIHA+VGENGAGKSTLMKVLSGVYPHGSYS Sbjct: 1 MSNILEMRGIEKSFPGVKALNNVNLAVREGEIHAIVGENGAGKSTLMKVLSGVYPHGSYS 60 Query: 61 GDIIYQGQTREFKDIVDSESVGIIIIHQELALVPLLSITENLFLGNEQASGGVIDWELSY 120 GDI+Y+G+ R FKDI DSE +GIIIIHQELALVPLLS+ ENLFLGNEQA GGVIDWE SY Sbjct: 61 GDIVYKGEVRAFKDIRDSEHLGIIIIHQELALVPLLSVMENLFLGNEQARGGVIDWEQSY 120 Query: 121 AKAKELLAKVGLKDPPSTLITNLGVGKQQLIEIAKALSKEVKLLILDEPTASLNESDSDA 180 +AKELLAKVGLK+ P T + +LGVGKQQLIEIAKALSKEVKLLILDEPTASLNESDSDA Sbjct: 121 VRAKELLAKVGLKESPLTQVGDLGVGKQQLIEIAKALSKEVKLLILDEPTASLNESDSDA 180 Query: 181 LLELLLELKAQGISSILISHKLNEISKVADSITVLRDGATVDTFDCRKEEISEDRIIQNM 240 LLELLLELK QGI+SILISHKLNEISKVADSITVLRDG TVDTFDCR E ISEDRIIQ+M Sbjct: 181 LLELLLELKRQGIASILISHKLNEISKVADSITVLRDGTTVDTFDCRAEPISEDRIIQHM 240 Query: 241 VGREMADRYPKREPQIGETIFEVKQWRVHHPIHPDRVVIKDIDFNVRKGEIVGIAGLMGA 300 VGREMADRYP+R+PQIGE IFEV+ WRVHHP+H DR+ IKD++ +VR GEIVGIAGLMGA Sbjct: 241 VGREMADRYPQRDPQIGEVIFEVRDWRVHHPLHTDRLAIKDVNMSVRAGEIVGIAGLMGA 300 Query: 301 GRTELAKSIFGRAYGTKISGEVYLHGKKIDVGTIQKAINHGIAYVTEDRKGDGLVLDEDI 360 GRTELAKSIFGRAYG KI+G+ +LHGK++D+ TI+KAI GIAYVTEDRKGDGLVL+EDI Sbjct: 301 GRTELAKSIFGRAYGKKITGQAFLHGKEVDLSTIEKAIAKGIAYVTEDRKGDGLVLEEDI 360 Query: 361 KKNISLANLGAISDKSVIDEAREFKVAADFRTKMRIRCSSVLQKVVNLSGGNQQKVVLSK 420 KKNISLANLG +S+++VIDEARE+K+AADF+ +MRIRCSSVLQKVVNLSGGNQQKVVLSK Sbjct: 361 KKNISLANLGGVSERTVIDEAREYKIAADFKQQMRIRCSSVLQKVVNLSGGNQQKVVLSK 420 Query: 421 WLFSNPEVLILD 432 WLFS PEVLILD Sbjct: 421 WLFSQPEVLILD 432 Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 64/233 (27%), Positives = 115/233 (49%), Gaps = 16/233 (6%) Query: 19 ALNNVNLAVRTGEIHAVVGENGAGKSTLMKVLSGVYPHGSYSGDIIYQGQTREFKDIVDS 78 A+ +VN++VR GEI + G GAG++ L K + G +G G+ + I + Sbjct: 278 AIKDVNMSVRAGEIVGIAGLMGAGRTELAKSIFGRAYGKKITGQAFLHGKEVDLSTIEKA 337 Query: 79 ESVGIIIIHQEL---ALVPLLSITENLFLGNEQASGGV-----IDWELSYAKAKELLAKV 130 + GI + ++ LV I +N+ L N GGV ID Y A + ++ Sbjct: 338 IAKGIAYVTEDRKGDGLVLEEDIKKNISLAN---LGGVSERTVIDEAREYKIAADFKQQM 394 Query: 131 GLKDPPSTL--ITNLGVGKQQLIEIAKALSKEVKLLILDEPTASLNESDSDALLELLLEL 188 ++ S L + NL G QQ + ++K L + ++LILDEPT ++ + ++ +L Sbjct: 395 RIR-CSSVLQKVVNLSGGNQQKVVLSKWLFSQPEVLILDEPTRGIDVGAKFEIYNIISKL 453 Query: 189 KAQGISSILISHKLNEISKVADSITVLRDGATVDTFDCRKEEISEDRIIQNMV 241 A+G I+IS ++ E+ + D I V+ +G V K E +++ I++ ++ Sbjct: 454 AAEGKCIIMISSEMPELLGMCDRIYVMNEGQFVGHLP--KAEATQENIMRAIM 504 >gi|300313777|ref|YP_003777869.1| D-xylose ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 518 Score = 385 bits (989), Expect = e-108, Method: Compositional matrix adjust. Identities = 199/431 (46%), Positives = 294/431 (68%), Gaps = 5/431 (1%) Query: 4 ILEMRGIEKTFPGVKALNNVNLAVRTGEIHAVVGENGAGKSTLMKVLSGVYPHGSYSGDI 63 +LEM+GI K+F GV+ALN +++ +R GE + GENGAGKSTLMK+LSGVYPHG++ G+I Sbjct: 5 LLEMKGIVKSFGGVRALNGIDIKIRPGECVGLCGENGAGKSTLMKILSGVYPHGTWEGEI 64 Query: 64 IYQGQTREFKDIVDSESVGIIIIHQELALVPLLSITENLFLGNE-QASGGVIDWELSYAK 122 ++ G+ + + D+E+ GI+IIHQEL LVP LS+ EN+F+G+E GG +++ Y + Sbjct: 65 LWDGKPLQAHSVRDTEAAGIVIIHQELMLVPELSVAENIFMGHEITLPGGRMNYPAMYRR 124 Query: 123 AKELLAKVGLKDPPSTL-ITNLGVGKQQLIEIAKALSKEVKLLILDEPTASLNESDSDAL 181 A+EL+ ++ + D L ++ G G QQL+EIAKAL+K+ +LLILDEP++SL S+ L Sbjct: 125 AEELMRELNMPDINVALPVSQYGGGHQQLVEIAKALNKDARLLILDEPSSSLTASEIGVL 184 Query: 182 LELLLELKAQGISSILISHKLNEISKVADSITVLRDGATVDTFDCRKEEISEDRIIQNMV 241 L+++ +LKA+G++ + ISHKL+E+++V D+I+V+RDG + T +E+ D+II MV Sbjct: 185 LKIIKDLKARGVACVYISHKLDEVAEVCDTISVIRDGKHIATTPM--QEMDVDKIITQMV 242 Query: 242 GREMADRYPKREPQIGETIFEVKQWRVHHPIHPDRVVIKDIDFNVRKGEIVGIAGLMGAG 301 GRE+ YP+R IGE + E + + +P R + D+ F+VR+GEI+GIAGL+GAG Sbjct: 243 GREITAMYPERNHAIGEVVLEARNITCYDIDNPRRKRVDDVSFSVRRGEILGIAGLVGAG 302 Query: 302 RTELAKSIFGRAYGTKISGEVYLHGKKIDVGTIQKAINHGIAYVTEDRKGDGLVLDEDIK 361 RTEL +IFG AY + G+V L GK D + K+I G+ V EDRK G+V D D+ Sbjct: 303 RTELVSAIFG-AYRGRYEGQVLLEGKPADTSSPLKSIRRGLCMVPEDRKHHGIVPDLDVG 361 Query: 362 KNISLANLGAISDKSVIDEAREFKVAADFRTKMRIRCSSVLQKVVNLSGGNQQKVVLSKW 421 +NI+L L S S ID + E K D +MR++ ++ + +LSGGNQQK VL+K Sbjct: 362 QNITLTVLNRFSRGSRIDGSAELKTIQDEIGRMRVKTATPFLPITSLSGGNQQKAVLAKM 421 Query: 422 LFSNPEVLILD 432 L + P+VLILD Sbjct: 422 LLAQPKVLILD 432 Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 64/243 (26%), Positives = 124/243 (51%), Gaps = 9/243 (3%) Query: 15 PGVKALNNVNLAVRTGEIHAVVGENGAGKSTLMKVLSGVYPHGSYSGDIIYQGQTREFKD 74 P K +++V+ +VR GEI + G GAG++ L+ + G Y G Y G ++ +G+ + Sbjct: 275 PRRKRVDDVSFSVRRGEILGIAGLVGAGRTELVSAIFGAY-RGRYEGQVLLEGKPADTSS 333 Query: 75 IVDSESVGIIIIHQEL---ALVPLLSITENLFLG--NEQASGGVIDWELSYAKAKELLAK 129 + S G+ ++ ++ +VP L + +N+ L N + G ID ++ + + Sbjct: 334 PLKSIRRGLCMVPEDRKHHGIVPDLDVGQNITLTVLNRFSRGSRIDGSAELKTIQDEIGR 393 Query: 130 VGLKDP-PSTLITNLGVGKQQLIEIAKALSKEVKLLILDEPTASLNESDSDALLELLLEL 188 + +K P IT+L G QQ +AK L + K+LILDEPT ++ + L+ EL Sbjct: 394 MRVKTATPFLPITSLSGGNQQKAVLAKMLLAQPKVLILDEPTRGVDVGAKAEIYRLISEL 453 Query: 189 KAQGISSILISHKLNEISKVADSITVLRDGATVDTFDCRKEEISEDRIIQNMVGREMADR 248 G++ I++S +L E+ V+D + V+ +G F + +S++ ++ + + + Sbjct: 454 AKAGLAIIMVSSELAEVLGVSDRVLVIGEGRLRGDF--VNDNLSQETVLAAAINQPVPQA 511 Query: 249 YPK 251 P+ Sbjct: 512 TPR 514 >gi|300310382|ref|YP_003774474.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 520 Score = 311 bits (798), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 175/433 (40%), Positives = 271/433 (62%), Gaps = 18/433 (4%) Query: 4 ILEMRGIEKTFPGVKALNNVNLAVRTGEIHAVVGENGAGKSTLMKVLSGVYPHGSYSGDI 63 ++ +R + K FPGV AL+N + GE+HA++GENGAGKSTLMK+LSGVY S GDI Sbjct: 22 VIALRNVCKRFPGVLALDNCQFELAAGEVHALMGENGAGKSTLMKILSGVYQRDS--GDI 79 Query: 64 IYQGQTREFKDIVDSESVGIIIIHQELALVPLLSITENLFLGNE--QASGGVIDWELSYA 121 + G+ E + ++++GI IIHQEL L+ LS +N+F+G E +A G ID + Sbjct: 80 LLDGKPVEITEPRQAQALGIGIIHQELNLMNHLSAAQNIFIGREPRKAMGLFIDEDELNR 139 Query: 122 KAKELLAKVGLKDPPSTLITNLGVGKQQLIEIAKALSKEVKLLILDEPTASLNESDSDAL 181 +A + A++ L PST + L V +QQ++EIAKALS + ++LI+DEPTA+LN ++ L Sbjct: 140 QAAAIFARMRLDMDPSTPVGELTVARQQMVEIAKALSFDSRVLIMDEPTAALNNAEIAEL 199 Query: 182 LELLLELKAQGISSILISHKLNEISKVADSITVLRDGATVDTFDCRKEEISEDRIIQNMV 241 ++ +L+AQG+ + ISHK++E+ ++AD ++V+RDG + T +E S D II MV Sbjct: 200 FRIIRDLQAQGVGIVYISHKMDELRQIADRVSVMRDGKYIATVPM--QETSMDTIISMMV 257 Query: 242 GREM--ADRYPKREPQIGETIFEVKQWRVHHPIHPDRVVIKDIDFNVRKGEIVGIAGLMG 299 GR + R P + + + EV+ I+D+ F +RKGEI+G AGLMG Sbjct: 258 GRALDGEQRIPPDTSR-NDVVLEVRGLNRGR-------AIRDVSFTLRKGEILGFAGLMG 309 Query: 300 AGRTELAKSIFGRAYGTKISGEVYLHGKKIDVGTIQKAINHGIAYVTEDRKGDGLVLDED 359 AGRTE+A++IFG +GE+ +HG K + + A+ HGI Y++EDRK GL + D Sbjct: 310 AGRTEVARAIFG--ADPLEAGEIIIHGGKAVIKSPADAVAHGIGYLSEDRKHFGLAVGMD 367 Query: 360 IKKNISLANLGAISDKSVIDEAREFKVAADFRTKMRIRCSSVLQKVVNLSGGNQQKVVLS 419 ++ NI+L+++G + +D+ + A + ++ I+ SV Q+ LSGGNQQK+V++ Sbjct: 368 VQANIALSSMGRFTRVGFMDQRAIREAAQMYVRQLAIKTPSVEQQARLLSGGNQQKIVIA 427 Query: 420 KWLFSNPEVLILD 432 KWL + ++L D Sbjct: 428 KWLLRDCDILFFD 440 Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 63/249 (25%), Positives = 120/249 (48%), Gaps = 14/249 (5%) Query: 4 ILEMRGIEKTFPGVKALNNVNLAVRTGEIHAVVGENGAGKSTLMKVLSGVYPHGSYSGDI 63 +LE+RG+ + +A+ +V+ +R GEI G GAG++ + + + G P +G+I Sbjct: 277 VLEVRGLNRG----RAIRDVSFTLRKGEILGFAGLMGAGRTEVARAIFGADPL--EAGEI 330 Query: 64 IYQGQTREFKDIVDSESVGIIIIHQE---LALVPLLSITENLFLGN--EQASGGVIDWEL 118 I G K D+ + GI + ++ L + + N+ L + G +D Sbjct: 331 IIHGGKAVIKSPADAVAHGIGYLSEDRKHFGLAVGMDVQANIALSSMGRFTRVGFMDQRA 390 Query: 119 SYAKAKELLAKVGLKDPPSTLITNL-GVGKQQLIEIAKALSKEVKLLILDEPTASLNESD 177 A+ + ++ +K P L G QQ I IAK L ++ +L DEPT ++ Sbjct: 391 IREAAQMYVRQLAIKTPSVEQQARLLSGGNQQKIVIAKWLLRDCDILFFDEPTRGIDVGA 450 Query: 178 SDALLELLLELKAQGISSILISHKLNEISKVADSITVLRDGATVDTFDCRKEEISEDRII 237 + +LL L QG + ++IS +L E+ +++ + V+ +G T + + + ++++I+ Sbjct: 451 KSEIYKLLDALAEQGKAIVMISSELPEVLRMSHRVLVMCEGRI--TGELARADATQEKIM 508 Query: 238 QNMVGREMA 246 Q RE A Sbjct: 509 QLATQRESA 517 >gi|300310063|ref|YP_003774155.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 521 Score = 285 bits (729), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 168/444 (37%), Positives = 266/444 (59%), Gaps = 34/444 (7%) Query: 2 STILEMRGIEKTFPGVKALNNVNLAVRTGEIHAVVGENGAGKSTLMKVLSGVYPHGSYSG 61 + +L+MRGI K+F AL++++L +R GEIHA++GENGAGKSTLMKVLSGV H G Sbjct: 4 TPLLQMRGIRKSFGATLALSDMHLTIRPGEIHALMGENGAGKSTLMKVLSGV--HAPDQG 61 Query: 62 DIIYQGQTREFKDIVDSESVGIIIIHQELALVPLLSITENLFLGNE-QASGGVIDWELSY 120 +I+ G+ +D S + GI +I+QELA+ P +S+ N+F+G+E + G+ID Sbjct: 62 EILLDGRPVALRDPGASRAAGINLIYQELAVAPNISVAANVFMGSELRTRLGLIDHAAMR 121 Query: 121 AKAKELLAKVGLKDPPSTLITNLGVGKQQLIEIAKALSKEVKLLILDEPTASLNESDSDA 180 ++ +L ++G S L L + +QQ +EIA+AL +++I+DEPTA+L+E +++ Sbjct: 122 SRTDAVLRQLGAGFGASDLAGRLSIAEQQQVEIARALVHRSRIVIMDEPTAALSERETEQ 181 Query: 181 LLELLLELKAQGISSILISHKLNEISKVADSITVLRDGATVDTFDCRKEEISEDRIIQNM 240 L ++ L+ +G++ I ISH++ E+ +AD +TVLRDG+ V + ++EI +RI+Q M Sbjct: 182 LFNVVRRLRDEGLAIIYISHRMAEVYALADRVTVLRDGSFVG--ELVRDEIDSERIVQMM 239 Query: 241 VGREMADRY------PKREPQIGETIFEVKQWRVHHPIHPDRVVIKDIDFNVRKGEIVGI 294 VGR +++ Y P Q+ T+ +V+ I+ F+VR GE++G Sbjct: 240 VGRSLSEFYQHQRIAPADAAQL-PTVMQVRALAGGK--------IRPASFDVRAGEVLGF 290 Query: 295 AGLMGAGRTELAKSIFGRAYGTKISGEVYLHGKKIDVGTIQKAINHGIAYVTEDRKGDGL 354 AGL+GAGRTELA+ +FG + G++ L G+ + + + A+ GIAYV EDRKG GL Sbjct: 291 AGLVGAGRTELARLLFG--ADPRSGGDILLEGRPVHIDQPRAAMRAGIAYVPEDRKGQGL 348 Query: 355 VLDEDIKKNISL------ANLGAISDKSVIDEAREFKVAADFRTKMRIRCSSVLQKVVNL 408 L + N ++ LG + +S+ AR ++ ++ + V L Sbjct: 349 FLQMAVAANATMNVASRHTRLGLVRSRSLGGVARAAI------QRLNVKVAHPETPVGKL 402 Query: 409 SGGNQQKVVLSKWLFSNPEVLILD 432 SGGNQQKV+L++WL P+VLILD Sbjct: 403 SGGNQQKVLLARWLEIAPKVLILD 426 Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/205 (26%), Positives = 96/205 (46%), Gaps = 22/205 (10%) Query: 27 VRTGEIHAVVGENGAGKSTLMKVLSGVYPHGSYSGDIIYQGQTREFKDIVDSESVGIIII 86 VR GE+ G GAG++ L ++L G P GDI+ +G+ + GI Sbjct: 282 VRAGEVLGFAGLVGAGRTELARLLFGADPRSG--GDILLEGRPVHIDQPRAAMRAGI--- 336 Query: 87 HQELALVPLLSITENLFLGNEQASGGVIDWELSYAK------------AKELLAKVGLK- 133 A VP + LFL A+ ++ + + A+ + ++ +K Sbjct: 337 ----AYVPEDRKGQGLFLQMAVAANATMNVASRHTRLGLVRSRSLGGVARAAIQRLNVKV 392 Query: 134 DPPSTLITNLGVGKQQLIEIAKALSKEVKLLILDEPTASLNESDSDALLELLLELKAQGI 193 P T + L G QQ + +A+ L K+LILDEPT ++ + +L+ L +QG+ Sbjct: 393 AHPETPVGKLSGGNQQKVLLARWLEIAPKVLILDEPTRGVDIYAKSEIYQLVHRLASQGV 452 Query: 194 SSILISHKLNEISKVADSITVLRDG 218 + ++IS +L E+ + D + V+R+G Sbjct: 453 AVVVISSELPEVIGICDRVLVMREG 477 >gi|300313728|ref|YP_003777820.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 546 Score = 278 bits (712), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 162/433 (37%), Positives = 249/433 (57%), Gaps = 12/433 (2%) Query: 2 STILEMRGIEKTFPGVKALNNVNLAVRTGEIHAVVGENGAGKSTLMKVLSGVYPHGSYSG 61 + +L + GI K F GV AL +V VR GE+ A++GENGAGKSTL+K+L+G+ H G Sbjct: 33 APVLSLSGIGKRFQGVVALQDVGFTVRPGEVMALLGENGAGKSTLVKILTGI--HQPDEG 90 Query: 62 DIIYQGQTREFKDIVDSESVGIIIIHQELALVPLLSITENLFLGNEQASGGV--IDWELS 119 I G+ F D+ GI +HQE + LS+ EN+++G + G IDW Sbjct: 91 SIHLGGREVRFASAQDAMRGGITAVHQETVMFEELSVAENIWIGRQPLCGTPRRIDWRRM 150 Query: 120 YAKAKELLAKVGLKDPPSTLITNLGVGKQQLIEIAKALSKEVKLLILDEPTASLNESDSD 179 +A+ L A++ + P + +L V ++ +EIA+ALS++ +++I+DEPTA+L+ + Sbjct: 151 EDEARALFARLEVDLPVRARVKDLSVAQRHFVEIARALSQQAQVVIMDEPTAALSHHEIG 210 Query: 180 ALLELLLELKAQGISSILISHKLNEISKVADSITVLRDGATVDTFDCRKEEISEDRIIQN 239 L ++ +L+ G + I ISHK +EI VAD TVLRDG + + + +I+E +++ Sbjct: 211 ELYRIIGQLRRAGTAVIFISHKFDEIYAVADRYTVLRDGRFIASGEL--ADITEQQLVAL 268 Query: 240 MVGREMADRYPKREPQIGETIFEVKQWRVHHPIHPDRVVIKDIDFNVRKGEIVGIAGLMG 299 MVGRE+ + + + V + V H HP D+ F VR GEI+G GL+G Sbjct: 269 MVGREVGQVFSRAASNTEDQTAPVLE--VKHLSHPSE--FDDVSFAVRPGEILGFYGLVG 324 Query: 300 AGRTELAKSIFGRAYGTKISGEVYLHGKKIDVGTIQKAINHGIAYVTEDRKGDGLVLDED 359 AGR+E+ ++FG + G V++ G+++ + + +AI HG+AYV EDR+ G +L Sbjct: 325 AGRSEVMHALFG--LSPEAQGAVWIDGREVKLCSPAQAIAHGLAYVPEDRQRQGALLSLP 382 Query: 360 IKKNISLANLGAISDKSVIDEAREFKVAADFRTKMRIRCSSVLQKVVNLSGGNQQKVVLS 419 I +NI+L L I RE +A ++ ++ S Q V LSGGNQQKVVL+ Sbjct: 383 IFQNITLPVLPGIGFFLRRHRRREIDIARRLCEQLELKASHFHQHVAQLSGGNQQKVVLA 442 Query: 420 KWLFSNPEVLILD 432 KWL + P VLILD Sbjct: 443 KWLATQPRVLILD 455 Score = 69.3 bits (168), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 66/218 (30%), Positives = 102/218 (46%), Gaps = 22/218 (10%) Query: 20 LNNVNLAVRTGEIHAVVGENGAGKSTLMKVLSGVYPHGSYSGDIIYQGQTREFKDIVDSE 79 ++V+ AVR GEI G GAG+S +M L G+ P G + G RE K ++ Sbjct: 304 FDDVSFAVRPGEILGFYGLVGAGRSEVMHALFGLSPEAQ--GAVWIDG--REVKLCSPAQ 359 Query: 80 SVGIIIIHQELALVP--------LLS--ITENLFLGNEQASGGVI--DWELSYAKAKELL 127 ++ LA VP LLS I +N+ L G + A+ L Sbjct: 360 AIA-----HGLAYVPEDRQRQGALLSLPIFQNITLPVLPGIGFFLRRHRRREIDIARRLC 414 Query: 128 AKVGLKDPP-STLITNLGVGKQQLIEIAKALSKEVKLLILDEPTASLNESDSDALLELLL 186 ++ LK + L G QQ + +AK L+ + ++LILDEPT ++ A+ + Sbjct: 415 EQLELKASHFHQHVAQLSGGNQQKVVLAKWLATQPRVLILDEPTKGIDIGSKAAVHRFIG 474 Query: 187 ELKAQGISSILISHKLNEISKVADSITVLRDGATVDTF 224 EL AQG++ IL+S +L E+ ++D I V+ G F Sbjct: 475 ELVAQGLAVILVSSELPEVMGMSDRIVVMHQGRVQQVF 512 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.135 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,255,717 Number of extensions: 50967 Number of successful extensions: 801 Number of sequences better than 1.0e-08: 124 Number of HSP's gapped: 614 Number of HSP's successfully gapped: 150 Length of query: 448 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 360 Effective length of database: 1,203,190 Effective search space: 433148400 Effective search space used: 433148400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)