BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0076.p
         (159 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310373|ref|YP_003774465.1| dihydroxyacid dehydratase/phosp...   263   4e-72
gi|300312632|ref|YP_003776724.1| dihydroxyacid dehydratase/phosp...   202   7e-54
gi|300313780|ref|YP_003777872.1| dihydroxyacid dehydratase/phosp...   100   5e-23

>gi|300310373|ref|YP_003774465.1| dihydroxyacid
           dehydratase/phosphogluconate dehydratase [Herbaspirillum
           seropedicae SmR1]
          Length = 585

 Score =  263 bits (673), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 120/125 (96%), Positives = 122/125 (97%)

Query: 4   DKKRTLRSAAWFGTADKNGFMYRSWMKNQGIPDHEFQGKPVIGICNTWSELTPCNAHFRK 63
           DK RTLRSA WFGTADKNGFMYRSWMKNQGIPDHEFQGKPVIGICNTWSELTPCNAHFRK
Sbjct: 7   DKSRTLRSAGWFGTADKNGFMYRSWMKNQGIPDHEFQGKPVIGICNTWSELTPCNAHFRK 66

Query: 64  IAEHVKRGIIEAGGFPVEFPVFSNGESNLRPTAMLTRNLASMDVEESIRGNPLDAVVLLV 123
           IAEHV+RGIIEAGGFPVEFPVFSNGESNLRPTAMLTRNLASMDVEESIRGNP+DAVVLL 
Sbjct: 67  IAEHVRRGIIEAGGFPVEFPVFSNGESNLRPTAMLTRNLASMDVEESIRGNPIDAVVLLT 126

Query: 124 GCDKT 128
           GCDKT
Sbjct: 127 GCDKT 131


>gi|300312632|ref|YP_003776724.1| dihydroxyacid
           dehydratase/phosphogluconate dehydratase [Herbaspirillum
           seropedicae SmR1]
          Length = 578

 Score =  202 bits (515), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 101/145 (69%), Positives = 115/145 (79%), Gaps = 6/145 (4%)

Query: 1   MTID-KKRTLRSAAWFGTADKNGFMYRSWMKNQGIPDHEFQGKPVIGICNTWSELTPCNA 59
           MT D KK T RS AWFG  D++GF+YRSW+KN+GIP  +F G+PVIGICNT+SELTPCN+
Sbjct: 1   MTDDTKKSTRRSQAWFGRQDRDGFIYRSWVKNRGIPHDQFDGRPVIGICNTYSELTPCNS 60

Query: 60  HFRKIAEHVKRGIIEAGGFPVEFPVFSNGESNLRPTAMLTRNLASMDVEESIRGNPLDAV 119
           HFR +AE VK GI EAGGFP+EFPV S GE+ LRPTAML RNLASMDVEESIR NPLD V
Sbjct: 61  HFRALAEQVKIGIWEAGGFPLEFPVMSLGETLLRPTAMLYRNLASMDVEESIRANPLDGV 120

Query: 120 VLLVGCDKTXAWASTWSWKTGPASV 144
           VLL+GCDKT     T +   G ASV
Sbjct: 121 VLLMGCDKT-----TPALLMGAASV 140


>gi|300313780|ref|YP_003777872.1| dihydroxyacid
           dehydratase/phosphogluconate dehydratase [Herbaspirillum
           seropedicae SmR1]
          Length = 594

 Score =  100 bits (249), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 53/125 (42%), Positives = 74/125 (59%), Gaps = 3/125 (2%)

Query: 7   RTLRSAAWFGTADKNGF--MYRSWMKNQGIPDHEFQ-GKPVIGICNTWSELTPCNAHFRK 63
           R  RS  WF   D      +Y     N GI   E + G+P+IGI  + S+++PCN    +
Sbjct: 9   RRFRSQDWFDNPDHIDMTALYLERFMNYGITAEELRSGRPIIGIAQSGSDISPCNRIHLE 68

Query: 64  IAEHVKRGIIEAGGFPVEFPVFSNGESNLRPTAMLTRNLASMDVEESIRGNPLDAVVLLV 123
           +A+ V+ GI +AGG P+EFP+    E+  RPTA + RNLA + + E + G P+DAVVL  
Sbjct: 69  LAKRVRDGIRDAGGIPMEFPLHPIFENCRRPTAAIDRNLAYLGLVEILHGYPIDAVVLTT 128

Query: 124 GCDKT 128
           GCDKT
Sbjct: 129 GCDKT 133


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.132    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 538,225
Number of extensions: 21212
Number of successful extensions: 42
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 3
Length of query: 159
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 81
Effective length of database: 1,250,540
Effective search space: 101293740
Effective search space used: 101293740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)