BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0074.p
         (332 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313165|ref|YP_003777257.1| hypothetical protein Hsero_3871...   317   1e-87

>gi|300313165|ref|YP_003777257.1| hypothetical protein Hsero_3871
           [Herbaspirillum seropedicae SmR1]
          Length = 339

 Score =  317 bits (811), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 158/315 (50%), Positives = 209/315 (66%), Gaps = 3/315 (0%)

Query: 3   LVQFKQADGSRQVGVLEDDGKKIRVVDGYRSTYALARAAIAKKSSLQDFANAALGSTVVD 62
           L+Q++   G R+VG++  +G +I+ +D   +   LA  A+ +   L+  A         D
Sbjct: 11  LIQYRDRAGERRVGIV--NGGQIQALDQVATMRELALLALQRGIGLERQAQLLNTDRCED 68

Query: 63  YAQVAASGGLLAPLDHEDTAHCYVTGTGLTHLGSADGRDAMHKKLDGAGDNLTDSMKMFR 122
           YA + A G +LAPLDH D AHC ++G G THLGSA  RD MH++++G   + TD+  M  
Sbjct: 69  YAAILAEGRILAPLDHPDPAHCRISGAGTTHLGSATTRDKMHRRIEGDELDKTDTQLMIE 128

Query: 123 MGLEGGKPAAGKIGVQPEWFYKGDGSIVRAAEEPLAMPHFALDGGEEPEIAGLYIIGDNG 182
            G+ GG+PAAG+ GVQPEWFYKGDGS + A    L  P FALDGGEEPEI GLY+I + G
Sbjct: 129 WGIAGGRPAAGEAGVQPEWFYKGDGSSIVAPGAALPRPDFALDGGEEPEIVGLYLIDEEG 188

Query: 183 QPYRLGFAIGNEFSDHVTERQNYLFLAHSKLRVCSVGPALLVGELPAHVQGTSRIRAQDG 242
            P RLGFAIGNEFSDHV ER+NYL+  HSKLR CS GP LLVG  PAH+ G +RIR ++G
Sbjct: 189 CPRRLGFAIGNEFSDHVMERRNYLYQGHSKLRHCSFGPELLVGLPPAHLVGMTRIR-RNG 247

Query: 243 KVRWEKPFVSGEDNMSHTVSNLEYHHFKYPLFRRPGDVHIHFFGTATLSCSDNITVAPGE 302
           +V WE+ F++G DNM H++ NLEYH+FKY      GDVH+H+ G A LS + ++    G+
Sbjct: 248 RVIWEQEFLTGPDNMCHSIENLEYHYFKYSHLLHAGDVHVHYMGAANLSFAYSVRTEDGD 307

Query: 303 TFEIDVAAFGPALRN 317
           + EI +  FG  L N
Sbjct: 308 SIEISIPDFGAPLVN 322


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,179,559
Number of extensions: 55413
Number of successful extensions: 112
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 246
Effective length of database: 1,212,660
Effective search space: 298314360
Effective search space used: 298314360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)