BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0069.p (903 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312874|ref|YP_003776966.1| TPR repeat-containing protein [... 570 e-163 gi|300311388|ref|YP_003775480.1| TPR repeat containing protein [... 272 9e-74 gi|300312352|ref|YP_003776444.1| TPR repeat containing protein [... 229 1e-60 gi|300311516|ref|YP_003775608.1| TPR repeat containing protein [... 187 3e-48 gi|300311075|ref|YP_003775167.1| methyltransferase [Herbaspirill... 71 3e-13 >gi|300312874|ref|YP_003776966.1| TPR repeat-containing protein [Herbaspirillum seropedicae SmR1] Length = 603 Score = 570 bits (1469), Expect = e-163, Method: Compositional matrix adjust. Identities = 298/593 (50%), Positives = 394/593 (66%), Gaps = 6/593 (1%) Query: 5 QNPAAAAVQIQQAVALHQSGELDKAEALYTKVLSKFPRHFQALYLLGMLELHRKNFKEAL 64 Q A + +Q+A+ALHQ G+L AE LY KVL K PRHF+A YL GML+LH+++++ A Sbjct: 3 QQANANQILLQKALALHQKGQLAPAEELYKKVLVKLPRHFEANYLYGMLKLHQEDWETAE 62 Query: 65 DLIDAALKINPTHIDALFDRATILEDTERYTEALRGYDLVLALKSDFTEALYRRGNVLRA 124 + A+++NP H+D FD A L R EA+ YDLVL + +DF EAL RG LR Sbjct: 63 AQLAKAIELNPDHLDTYFDHAGALAHLGRDDEAVARYDLVLTVNADFVEALLARGAALRR 122 Query: 125 MKRHMEALDCYKRVLAVKPDHAQAWLKQGNSLNDLGRLREALTCYEKAVETAPEYPEALF 184 + R+ EAL +R A+ PD+A AW ++GN L+D +A YE+AV P++ EA F Sbjct: 123 LGRNREALADLERATALAPDNADAWFQRGNVLHDSYAYGDARESYERAVALRPDFIEAWF 182 Query: 185 NLANTLKEFGRLDEAMATYDKVLTIEPDFAEAIANRAFLLVGQNRLEEALADYDHALRLL 244 NL NT K+ +LD+A+ YD+ L ++PDF EAI+NR ++L R EAL YD AL L Sbjct: 183 NLGNTCKDGNQLDQALRAYDRALEVQPDFFEAISNRGYVLFKMQRPAEALQAYDRALALD 242 Query: 245 PDFSEALYNRAATLEELQRYDEAIEAYKRVPQNDPNFQSACWNTALANLKLGNLEAGWRQ 304 + +NR +TLE+L R++EA E+Y+R P+ SA WN AL L+ G+ GW+ Sbjct: 243 ERAPDLWFNRGSTLEQLYRFEEASESYRRAKALKPDAGSATWNEALMQLRQGDFVNGWKG 302 Query: 305 YEQRWQTEQMRKTQRYFTQPLWLGQESLLGKTILLHSEQGFGDTLQFVRYVPLLAERGAR 364 +E RW TEQMR QR F QPLWLG++ L GKTILLH+EQGFGDTLQFVRY PLLA RGAR Sbjct: 303 FETRWATEQMRGQQRQFMQPLWLGEQPLEGKTILLHAEQGFGDTLQFVRYAPLLAARGAR 362 Query: 365 VILQVQPALKLLLAKLKGVAILLATGE-QSPPFDLHCPLMSLPLACETFTLSDIPNQTYL 423 VIL+VQPAL LA L GV ++ T PPFD HCPLMSLPLAC+TF+ +DIP YL Sbjct: 363 VILEVQPALTRQLAGLPGVTQVIGTDHFMRPPFDFHCPLMSLPLACKTFSEADIPRAPYL 422 Query: 424 AVDPLKSESWRVRLGDKRKPRIGLVWSGSNPRANSPASKRLDAVRSMPFATLSPLL---- 479 + +W RL R R+GLVW+GS+ + + P + R+D RS+PFATL+PL+ Sbjct: 423 LPEASSWAAWHQRLPRNRALRVGLVWAGSSAQTH-PDAVRIDGERSLPFATLAPLVELAR 481 Query: 480 QNDAVDYSSLQVVDNAVLRLPMYGDGKRVADYSRDLRDFSDTAALIDNLDLVISVDTAVA 539 ++ A+++ SLQV +AV +L + V D S +L DF++T AL+ NLDL+I+VDT+V Sbjct: 482 EHAALEFYSLQVGQDAVAQLHAHPLASLVRDCSPELHDFAETGALLANLDLLITVDTSVC 541 Query: 540 HLAGALGKPVWLLNRYNPDWRWLLERSDSPWYPSMRIFRQSKAGDWSTVVSAV 592 HLAGALG+PVWLLNR+N WRW +ER DSPWY M IF Q AG W V++ V Sbjct: 542 HLAGALGRPVWLLNRHNGCWRWQVEREDSPWYGGMTIFGQRTAGQWDEVIARV 594 >gi|300311388|ref|YP_003775480.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 658 Score = 272 bits (696), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 194/638 (30%), Positives = 311/638 (48%), Gaps = 58/638 (9%) Query: 3 PNQNPAAAAVQIQQAVALHQSGELDKAEALYTKVLSKFPRHFQALYLLGMLELHRKNFKE 62 P ++P + +++A+ L S + D+A+AL VLS+ P A + G++ +H F + Sbjct: 17 PPKHPLQDLLDVRKALDLLDSRKTDEAKALCMAVLSRNPTLVFANHARGLVAMHEGKFAD 76 Query: 63 ALDLIDAALKINPTHIDALFDRATILEDTERYTEALRGYDLVLALKSD------------ 110 A + A++ +P + + + + A + +R EA+ Y+ + + D Sbjct: 77 AEAYLRKAIEADPENAEYMSNLAGTVLSQDRIDEAIALYEHAIRIDRDHRASRIGLANAL 136 Query: 111 ------------FTEALYRR----------GNVLRAMKRHMEALDCYKRVLAVKPDHAQA 148 F +A+ R G L KR+ EA+ + L ++ A + Sbjct: 137 HEKNDPEASVAYFEDAVKREPNAPGPLSHLGRALIECKRYNEAVAVILKSLELQISFAPS 196 Query: 149 WLKQGNSLNDLGRLREALTCYEKAVETAPEYPEALFNLANTLKEFGRLDEAMATYDKVLT 208 G + + + +EA+ ++ A+ P+ A +A++ + R+DEA +V+ Sbjct: 197 HTALGEAFHAMEMYKEAIESHKTAILLDPQDTYAHNKIADSYLKLNRIDEAHEHLLRVIE 256 Query: 209 IEPDFAEAIAN-RAFLLVGQNRLEEALADYDHALRLLPDFSEALYNRAATLEELQRYDEA 267 I P A + +R ++A+ ++ AL + + N A + ++A Sbjct: 257 IAPKDPNAYVKLGSSYFSTSDRFDDAMRMFNKALEVDSKHALTYNNIGAIQHDHGDLEDA 316 Query: 268 IEAYKRVPQNDPNFQSACWNTALANLKLGNLEAGWRQYEQRWQTEQMRKTQRYFTQ---- 323 I +++ + PN+ +A N AL+ L G+L+ GW +E R T + R + Sbjct: 317 IGNFRKALELRPNYPTARHNIALSLLLQGHLKEGWECHESRLVTRERSHVYRLIHKLFDL 376 Query: 324 -PLWLGQESLLGKTILLHSEQGFGDTLQFVRYVPLLAERGARVILQVQPALKLLLAKLKG 382 P W G+ SL GK ILL EQGFGD++QF+RYV ++ ++GARV L V+ L L Sbjct: 377 IPKWDGKSSLAGKYILLMHEQGFGDSIQFLRYVRMVLDQGARVALHVKNPLYRLFQSYSP 436 Query: 383 VAILLATGEQSPPFDLHCPLMSLPLACETFTLSDIPN--QTYLAVDPLKSESWRVRL--- 437 L+ + PP D LMSLP A T T+ DIP+ YL+ DP+ SW ++ Sbjct: 437 EVTLVRESDPLPPCDCAYVLMSLPYAMGTDTVDDIPSVPGGYLSADPILKSSWGEKIRQL 496 Query: 438 -GDKRKPRIGLVWSGSNPRANSPASKRLDAVRSMPFATLSPLLQNDAVDYSSLQVVD--N 494 K R+G+VW G+ N D RS+ + L Q +++ SLQ + Sbjct: 497 SQSPEKLRVGVVWGGNPEHGN-------DRHRSIAMDKFATLFQLPNIEFYSLQKGKPLD 549 Query: 495 AVLRLPMYGDGKRVADYSRDLRDFSDTAALIDNLDLVISVDTAVAHLAGALGKPVWLLNR 554 A LP G + + D +DF+DTAA I NLDLV+SVDT+V HLAGALG P W+L Sbjct: 550 AFKALP---PGLPIFNLGDDCQDFADTAAAIANLDLVVSVDTSVVHLAGALGHPTWVLLP 606 Query: 555 YNPDWRWLLERSDSPWYPSMRIFRQSKAGDWSTVVSAV 592 + PDWRWL +R DSPWYP MR+FRQ DW +V++ V Sbjct: 607 HVPDWRWLQDREDSPWYPGMRLFRQPALSDWESVLTKV 644 >gi|300312352|ref|YP_003776444.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 570 Score = 229 bits (583), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 198/573 (34%), Positives = 282/573 (49%), Gaps = 33/573 (5%) Query: 50 LGMLELHRKNFKEALDLIDAALKINPTHIDALFDRATILEDTERYTEALRGYDLVL-ALK 108 L + ++++ EA L+ A L +P DAL ++ R+ EA + L L Sbjct: 9 LALSHFDQEDYAEAQALLFALLDAHPRDKDALHLLGSVAAAQGRFAEAALAWQQALRLLP 68 Query: 109 SDFTEAL---YRRGNVLRAMKRHMEALDCYKRVLAVKPDHAQAWLKQGNSLNDLG----R 161 D EAL YR G R +A Y+ ++ + ++ +L + Sbjct: 69 PDSEEALALRYRLGRAFYEEGRFEDAFLLYRELIESGWQLPELFVAAAAALQGMSPSGKN 128 Query: 162 LREALTCYEKAVETAPEYPEALFNLANTLKEFGRLDEAMATYDKVLTIEPDFAEAIANRA 221 +AL E+A++ P + A + + D A + L ++ A+ Sbjct: 129 DPQALALLEEALQRDPGQADTWHRKAALHERARQWDAARQCIHQALRLDDQRAQYWLAAG 188 Query: 222 FLLVGQNRLEEALADYDHALRLLPDFSEALYNRAATLEELQRYDEAIEAYKRVPQNDPNF 281 + Q + EEAL YD AL L P+ +A +R TL L++++EAI++Y+R + D Sbjct: 189 LVEHAQGQFEEALRYYDQALILAPELVDAHVSRGTTLARLRQHEEAIDSYRRALRIDDKD 248 Query: 282 QSACWNTALANLKLGNLEAGWRQYEQRWQTEQMRKTQRYFTQPLWLGQESLLGKTILLHS 341 A N AL+ L LG LE W YE RW+ R+ T P W G SL GK ILL + Sbjct: 249 ADAHLNLALSLLVLGRLEQAWPLYEWRWEGRSA-DPYRHATIPAWNGGSSLAGKRILLWA 307 Query: 342 EQGFGDTLQFVRYVPLLAERGARVILQVQPALKLLLAKLK--GVAILLATGEQSPPFDLH 399 EQG GDT+QF RYV L+ + GA+V+L+V +L L+ L L+A GE P D Sbjct: 308 EQGQGDTIQFSRYVALILQAGAQVVLEVPASLLALMHSLAVPTPLTLVAMGEPLPEVDFQ 367 Query: 400 CPLMSLPLACETFTLSDIPNQT-YLAVDPLKSESWRVRLGD--KRKP---RIGLVWSGSN 453 PLMSLPL C T DIP YL DP + W RL R P RIGLV SG+ Sbjct: 368 LPLMSLPLVCNTRA-DDIPAAVPYLCADPARRILWEERLATLAPRSPARMRIGLVCSGNA 426 Query: 454 PRANSPASKRLDAVRSMPFATLSPL-LQNDAVDYSSLQV-VDNAVLRLPMYGDGKRVADY 511 N DA RS+ + +PL L +D+ +Q + A + G Sbjct: 427 GNVN-------DARRSIELSRFAPLALARPQLDFFVIQPDLRQADRQWCEQQPGWHWVGA 479 Query: 512 SRDLRDFSDTAALIDNLDLVISVDTAVAHLAGALGKPVWLLNRYNPDWRWLLERSDSPWY 571 + + DF+DTAA++ +DLVISVDTA AHLAGA+ PVW+ Y PDWRWLL +DSPWY Sbjct: 480 A--INDFADTAAVLAGMDLVISVDTAAAHLAGAMACPVWIALPYAPDWRWLLNAADSPWY 537 Query: 572 PSMRIFRQSKAGDWSTVV----SAVVLNGDEPA 600 P+ R+FRQ + G W V+ +A+ ++G P Sbjct: 538 PTARLFRQQQPGAWDDVILTLRAALAVHGASPG 570 >gi|300311516|ref|YP_003775608.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 528 Score = 187 bits (475), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 166/527 (31%), Positives = 242/527 (45%), Gaps = 60/527 (11%) Query: 75 PTHIDALFDRATILEDTERYTEALRGYDLVLALKSDFTEALYRRGNVLR--AMKRHMEAL 132 P+ + RA +L++ EA+ L L D+ EA ++L+ A + ++ Sbjct: 43 PSFLPLYMQRADLLQEMGALPEAIAACAACLDLAPDYDEARALHRSLLQRWATQCELQTA 102 Query: 133 DCYKRVLAVKPDHAQAWLKQGNSLNDLGRLREALTCYEKAVETAPEYPEALFNL-ANTLK 191 D A D A+A L+ L L + AL + + AL L A+ L Sbjct: 103 DEGASGSAALIDLARARLQLDQPLPALAAVERALASGQAGL--------ALHALHADILL 154 Query: 192 EFGRLDEAMATYDKVLTIEPDFAEAIANRAFLLVGQNRLEEALADYDHALRLLPDFSEAL 251 R +EA+ Y + A N A +L R+E+A A ++ ALR PDF EA Sbjct: 155 RLNRHEEALECYPPAADEDQARALHAFNMADILRRMGRIEQAQAAFEQALRWHPDFPEAE 214 Query: 252 YNRAATLEELQRYDEAIEAYKRVPQNDPNFQSACWNTALANLKLGNLEAGWRQYEQRWQT 311 RA L Q Y E GWR +E R+ Sbjct: 215 VGRAHMLLSQQHYAE----------------------------------GWRAHEARFGI 240 Query: 312 EQMRKTQRYFTQPLWLGQESLLGKTILLHSEQGFGDTLQFVRYVPLLAERGARVILQVQP 371 ++ + +P W E + GK +LL +EQG GDTLQF RY+PL+A++ A V L Sbjct: 241 AELARRGIDSPRPRWRAGEPVRGKRVLLWAEQGQGDTLQFARYIPLVAQQAAEVSLCAPA 300 Query: 372 ALKLLLAKLKGVAILLATGEQSPPFDLHCPLMSLPLACETFTLSDIPNQTYLAVDPLKSE 431 +L +LA +A ++P DLH L+SLPL P YLA P + + Sbjct: 301 SLLAVLAPCLPQVRCMANPGEAPDHDLHASLLSLPLLLGLPDPRQGPPSPYLAAQPQRVQ 360 Query: 432 SWRVRLGD-----KRKPRIGLVWSGSNPRANSPASKRLDAVRSMPFATLSPLLQNDAVDY 486 W+ L R+PR+G+ W+G + R +P L+PL A D+ Sbjct: 361 QWQAYLSALWPAMPRRPRLGIAWAGRQ-------YATVHHSRDIPLDALAPLWTLPA-DF 412 Query: 487 SSLQVVDNAVLRLPMYGDGKRVADYSRDLRDFSDTAALIDNLDLVISVDTAVAHLAGALG 546 SLQV A + +R+ ++ L D++DTAAL+ LDLVISVDTAV HLAGALG Sbjct: 413 VSLQVEVPAGDQAAHATLAQRL--HTPTLVDWADTAALLCALDLVISVDTAVVHLAGALG 470 Query: 547 KPVWLLNRYNPDWRWLLERSDSPWYPSMRIFRQSKAGDWSTVVSAVV 593 P L RY+ +WRW ++ S +PWYPS+++ RQ + G W VV ++ Sbjct: 471 VPCLLPLRYDGEWRWGVKGSQTPWYPSLQLLRQRERGQWGPVVEEML 517 >gi|300311075|ref|YP_003775167.1| methyltransferase [Herbaspirillum seropedicae SmR1] Length = 448 Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 62/214 (28%), Positives = 92/214 (42%), Gaps = 4/214 (1%) Query: 3 PNQNPAAAAVQ----IQQAVALHQSGELDKAEALYTKVLSKFPRHFQALYLLGMLELHRK 58 P Q+PA A ++QA+ H +G LD+A A+Y VL P H AL+ G+ Sbjct: 7 PTQDPARAGAHYEALLRQAIDAHMAGRLDQACAIYEAVLEADPIHPLALHYYGIWLHQDG 66 Query: 59 NFKEALDLIDAALKINPTHIDALFDRATILEDTERYTEALRGYDLVLALKSDFTEALYRR 118 EALD ++ A + P + D DR +L ++ A + Y LAL+ D Sbjct: 67 QHDEALDKLELASALEPDNADWHNDRGNVLFALQQPALAEQAYADALALRPDDHTIWNNL 126 Query: 119 GNVLRAMKRHMEALDCYKRVLAVKPDHAQAWLKQGNSLNDLGRLREALTCYEKAVETAPE 178 G VL + +A+ ++R L + PD + L G G +A +A P Sbjct: 127 GAVLLQQDKRPDAISAFERALQIDPDFLPSLLHLGGIHEAAGDKMQASHYQCRAYVLPPL 186 Query: 179 YPEALFNLANTLKEFGRLDEAMATYDKVLTIEPD 212 ++ L + GRL EA Y L EPD Sbjct: 187 EGKSWEMLGISFYFLGRLPEAAEAYRAWLREEPD 220 Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/137 (32%), Positives = 65/137 (47%) Query: 145 HAQAWLKQGNSLNDLGRLREALTCYEKAVETAPEYPEALFNLANTLKEFGRLDEAMATYD 204 H +A L+Q + GRL +A YE +E P +P AL L + G+ DEA+ + Sbjct: 17 HYEALLRQAIDAHMAGRLDQACAIYEAVLEADPIHPLALHYYGIWLHQDGQHDEALDKLE 76 Query: 205 KVLTIEPDFAEAIANRAFLLVGQNRLEEALADYDHALRLLPDFSEALYNRAATLEELQRY 264 +EPD A+ +R +L + A Y AL L PD N A L + + Sbjct: 77 LASALEPDNADWHNDRGNVLFALQQPALAEQAYADALALRPDDHTIWNNLGAVLLQQDKR 136 Query: 265 DEAIEAYKRVPQNDPNF 281 +AI A++R Q DP+F Sbjct: 137 PDAISAFERALQIDPDF 153 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.135 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,628,595 Number of extensions: 106629 Number of successful extensions: 432 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 374 Number of HSP's successfully gapped: 10 Length of query: 903 Length of database: 1,619,870 Length adjustment: 94 Effective length of query: 809 Effective length of database: 1,174,780 Effective search space: 950397020 Effective search space used: 950397020 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 135 (56.6 bits)