BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0068.p
         (227 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312873|ref|YP_003776965.1| hypothetical protein Hsero_3578...   392   e-110
gi|300310596|ref|YP_003774688.1| 2-keto-4-pentenoate hydratase/2...   122   3e-29

>gi|300312873|ref|YP_003776965.1| hypothetical protein Hsero_3578
           [Herbaspirillum seropedicae SmR1]
          Length = 227

 Score =  392 bits (1008), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 184/226 (81%), Positives = 204/226 (90%)

Query: 1   MSYAIPVPAVTTVPVVGGDPFPVRRIYCVGRNYAAHAREMGHDPNREAPFFFMKPTDTIV 60
           MS+AIP PA  TV VVGG  FPVRRIYCVGRNYAAHAREMGHDP+RE PFFFMKP D +V
Sbjct: 1   MSFAIPAPAQATVAVVGGAAFPVRRIYCVGRNYAAHAREMGHDPDREPPFFFMKPADAVV 60

Query: 61  PTDSAVPYPSKTNDYQHEIELVVALGKGGRDVPADQALDLVFGYAVGLDMTRRDLQGEAK 120
           PTDS VPYP  T+DY HEIELVVAL KGGR++P +QAL+LVFGYAVGLDMTRRD+Q +AK
Sbjct: 61  PTDSVVPYPVATSDYHHEIELVVALAKGGRNIPVEQALELVFGYAVGLDMTRRDIQSQAK 120

Query: 121 KLARPWDMGKGFDHSAPCAPLLPVSRIGHPEQGAIWLKVNGEVRQQGDLSDLIWNVAETI 180
           KL RPWDM KGFD SAPCAP++PV++ GHP+QGA+WLKVNGEVRQQGDL+DLIW+VAETI
Sbjct: 121 KLGRPWDMAKGFDQSAPCAPIVPVAQAGHPDQGAVWLKVNGEVRQQGDLADLIWSVAETI 180

Query: 181 SYLSGLVELFPGDLIYTGTPEGVGAVVKGDKLHGHVDGLVDLNITI 226
           SYLSGLVELFPGDLI+TGTPEGVGAVVKGDKL GHVDGL D+NITI
Sbjct: 181 SYLSGLVELFPGDLIFTGTPEGVGAVVKGDKLQGHVDGLPDINITI 226


>gi|300310596|ref|YP_003774688.1| 2-keto-4-pentenoate
           hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase
           [Herbaspirillum seropedicae SmR1]
          Length = 281

 Score =  122 bits (306), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 115/222 (51%), Gaps = 11/222 (4%)

Query: 10  VTTVPVVGGDPF------PVRRIYCVGRNYAAHAREMGHDPNREAPFFFMKPTDTIVPTD 63
           + T+PVV G+P        + +  C+G NYA HA E  + P    P  F K T  +V  +
Sbjct: 51  LNTLPVVEGNPRIGACVGNIGKFICIGLNYADHAAE-SNLPIPAEPVVFNKWTSAVVGPN 109

Query: 64  SAVPYPSKTNDYQHEIELVVALGKGGRDVPADQALDLVFGYAVGLDMTRRDLQGEAKKLA 123
             V  P  +     E+EL V +GKGG  +    A+  V GY V  D++ R+ Q E     
Sbjct: 110 DNVKIPRGSKKTDWEVELGVIIGKGGSYIDEKDAMSHVAGYCVVNDVSEREYQIER---G 166

Query: 124 RPWDMGKGFDHSAPCAP-LLPVSRIGHPEQGAIWLKVNGEVRQQGDLSDLIWNVAETISY 182
             WD GKG D   P  P L+    +  P++  +WL+V+G+  Q G+ S +I+NVA  +SY
Sbjct: 167 GTWDKGKGCDTFGPIGPWLVTRDEVADPQKLGMWLEVDGKRYQNGNTSTMIFNVAHIVSY 226

Query: 183 LSGLVELFPGDLIYTGTPEGVGAVVKGDKLHGHVDGLVDLNI 224
           LS  + L PGD+I TGTP GVG  VK + ++      + L I
Sbjct: 227 LSRFMSLQPGDVISTGTPPGVGMGVKPEAVYLRAGQTIRLGI 268


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.140    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 794,872
Number of extensions: 37621
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 2
Length of query: 227
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 145
Effective length of database: 1,231,600
Effective search space: 178582000
Effective search space used: 178582000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)