BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0065.p
         (140 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312872|ref|YP_003776964.1| ATP-dependent RNA helicase [Her...    83   7e-18

>gi|300312872|ref|YP_003776964.1| ATP-dependent RNA helicase
           [Herbaspirillum seropedicae SmR1]
          Length = 487

 Score = 83.2 bits (204), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 45/65 (69%), Positives = 49/65 (75%), Gaps = 2/65 (3%)

Query: 1   LFSDKDERLLVDIEKLIKIKFVRSELTGFVPRQRSERG--GERGERSERSGRGERTERGD 58
           LF DKD+RLL DIEKLIK KF R+ELTGF PR R ER    ERGERSER  R +R +R D
Sbjct: 365 LFCDKDDRLLTDIEKLIKKKFERAELTGFAPRARHERSDRAERGERSERGERSDRGDRSD 424

Query: 59  RGERS 63
           RGERS
Sbjct: 425 RGERS 429


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.133    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 341,777
Number of extensions: 10952
Number of successful extensions: 22
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 1
Length of query: 140
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 64
Effective length of database: 1,260,010
Effective search space: 80640640
Effective search space used: 80640640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 126 (53.1 bits)